Pairwise Alignments

Query, 396 a.a., membrane protein from Azospirillum brasilense Sp245

Subject, 404 a.a., hypothetical transporter component (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 225 WPLVWGAVALAVLNFATLALAGRPWGITSAFALWGSKGLAALGVDVASWPFWQAPAQARA 284
           W  +   +A  +L+     L G  W +T  F  WG   L  +G +  +W +++       
Sbjct: 15  WAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANPETWGYFKVIG---- 70

Query: 285 LQESVLADVTSVMDFGIILGALLAAGLAGKFAPVWKLPLRSLVAAVIGGLLLGYGSRLAY 344
           LQ S L  +  +M  G+  G + AA  A             +  A+IGG++ G+G+RLA 
Sbjct: 71  LQGSPLDRIDGMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGIIAGFGARLAM 130

Query: 345 GCNIGAYFSGIASGSLHGWVWIVAALAGNYLGT--GLRPFFGLEVE 388
           GCN+ A+F+GI   SLH W + +A  AG+Y G    L P F + V+
Sbjct: 131 GCNLAAFFTGIPQFSLHAWFFALATAAGSYFGARFTLLPMFRIPVK 176



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 17/206 (8%)

Query: 6   WRVVTVALLALVGGGLWIGDAVSGRQAALYLVGGV-LGLVLYHALFGFTSAFRVFIADRR 64
           +R+  +   A++G GL      +  +  + ++ GV  GL++  A   FTSAFR      R
Sbjct: 197 FRIGMLVFAAIIGWGLLT--MFNAPKLGIAMLCGVGFGLLIERAQICFTSAFRDMWITGR 254

Query: 65  GAGLRAQMVMLAVACALFFPVLAAGTLFGTPVKGLVSPVGLSVVAGAFLFGIGMQLGGGC 124
               +A ++ +AV+    +  +      G P K  +   G + V G  LFG G+ L GGC
Sbjct: 255 THMAKAIILGMAVSAIGIYSYVQ----LGVPPK--IMWAGPNAVIGGLLFGFGIVLAGGC 308

Query: 125 ASGTLFTVGGGSTRMVVTLAFFIVGSVLGAYHLPWWQ--AQWTAA---PVSVVAAWGWPV 179
            +G ++    G           ++GS L AY   +W   AQ  A     V+++ ++G   
Sbjct: 309 ETGWMYRAVEGQVHFWWVGLGNVLGSTLLAY---YWDDLAQPLATNWDKVNLLTSFGDKG 365

Query: 180 ALAVNLAIFAAVYAGTLALEKRRHGR 205
            L V   + A  +A  L  EKR   R
Sbjct: 366 GLLVTYLLLALSFAAMLLWEKRFFAR 391



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 329 AVIGGLLLGYGSRLAYGCNIGAYFSGIASGSLHGWVWIVAALAGNYLGTGLRPFF 383
           AVIGGLL G+G  LA GC  G  +  +  G +H W W+     GN LG+ L  ++
Sbjct: 291 AVIGGLLFGFGIVLAGGCETGWMYRAV-EGQVHFW-WVG---LGNVLGSTLLAYY 340



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 110 GAFLFGIGMQLGGGCASGTLFTVGGGSTRMVVTLAFFIVGSVLGAYHLPWWQAQWTAAPV 169
           G  + G G +L  GC     FT   G  +  +   FF + +  G+Y    + A++T  P+
Sbjct: 118 GGIIAGFGARLAMGCNLAAFFT---GIPQFSLHAWFFALATAAGSY----FGARFTLLPM 170