Pairwise Alignments

Query, 841 a.a., histidine kinase from Azospirillum brasilense Sp245

Subject, 1581 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  286 bits (732), Expect = 7e-81
 Identities = 161/395 (40%), Positives = 240/395 (60%), Gaps = 13/395 (3%)

Query: 449  IDMTERKGLEAQFAQSQKMQAVGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPGDQSFSD 508
            I+M ER+  E     +QKM+A+GQL GG+AHDFNN+LT ++G  DL+  R   G     D
Sbjct: 1190 IEMAERERAEDALRHAQKMEAIGQLTGGLAHDFNNMLTGVLGALDLIQRRVANGVTGDLD 1249

Query: 509  --IMQIKQNANRAANLVRQLLAFSRQQTLQPRILSVTDVLAELGNLMRRLIGENIELKML 566
              I     +ANRAA L  +LLAF+R+Q+L P+ + V  ++  + +++RR +GE+I+L++ 
Sbjct: 1250 RYIDAATTSANRAAALTHRLLAFARRQSLDPKPVDVNLLVVSMEDMLRRTMGEHIQLEVE 1309

Query: 567  HGRDIGYVKVDQNQLEQVIINLVVNARDAMAGGGRLTIVTSNHVVEQAQRREHETIPAGD 626
               D      D +QLE  ++NLV+NARDAM  GGRL + T N    + Q  + +    GD
Sbjct: 1310 LQSDAWIAYTDGHQLENALLNLVINARDAMPDGGRLGVNTCN---VRIQHHQPDAPEPGD 1366

Query: 627  YVSIEVIDTGCGIPKENLQRIFEPFFTTKGVGSGTGLGLSTVYGIVRQTGGFVLVESEKG 686
            YV + V D G G+  + + + F+PFFTTK +G GTGLGLS VYG  +QTGG V ++S  G
Sbjct: 1367 YVVLSVTDNGSGMSAQTIAKAFDPFFTTKPIGQGTGLGLSMVYGFAKQTGGHVRIDSRLG 1426

Query: 687  EGTTFTILLPRHKGEARPDQGEPRERRGSDLTGSGTIMLVEDEDAVRVFSARALRNKGYQ 746
            EGT   + LPR++ E  P  G  ++          T+++VEDE AVR+     L   GYQ
Sbjct: 1427 EGTQVILYLPRNQAEDAPPPGPQQQTEVPSAMHGETVLVVEDEAAVRMLVVEVLNELGYQ 1486

Query: 747  VLEAKNGEAALQQIGTDGSRIDLLITDVVMPQMDGPTLARHVRQVRPDMRVIFISGYAED 806
            VLEA +  +AL  + ++   +DLLITD  +P ++G  L    RQ RP+++V+FI+GY  D
Sbjct: 1487 VLEACDAGSALPHLHSE-QHLDLLITDFGLPGLNGRQLVESARQHRPELKVLFITGYVPD 1545

Query: 807  RLGEID----GVEVAHFLPKPFSLKQLASKVKEVI 837
                 D    G+++   LPKPFS+  LA++++++I
Sbjct: 1546 EEMRNDFLGPGMDI---LPKPFSIDILAARIRKLI 1577



 Score = 62.4 bits (150), Expect = 2e-13
 Identities = 100/388 (25%), Positives = 148/388 (38%), Gaps = 44/388 (11%)

Query: 27  RPGGGFATAVLAALLLA---GLVAAGAGVVLDRDPVAWAGLTTAGAGALALAIRMVRARR 83
           R G G      AA +L    GL A G   V D  P     LT   A  L    R V A  
Sbjct: 123 RFGDGEIAGFYAAAILRDDDGL-ALGTLCVCDHQP---RELTARQAAQLQAVARQVMALL 178

Query: 84  RVARVGSLLGSALEGLPSGQ----LVCDGAGHVVFVNSTFRSLTGWSEGEPPLRALERQF 139
            + R+ +    + + + S Q    L  D  G++   NS  + L GWS  E   +     F
Sbjct: 179 ELRRLRAEEERSRQIIDSAQDYAILATDPNGYITSWNSGAQLLLGWSAEEAIGQHASMIF 238

Query: 140 ADDADSADAFRRLCERVKGGYSGSIELAVRQQGRAAEWR--------RIQGQPI------ 185
            D+           +R +      +  A+ +QGRA + R        R  G  I      
Sbjct: 239 TDE-----------DRARSVDEQEMRTAL-EQGRAIDERWHQRSDGSRFWGSGILTPLLA 286

Query: 186 DGHAGAVMWRVEDITARRELEQVTRREQTQLVDFMDHAPIGFFSVDQDGHFQFVNATLAK 245
           +G     +  + D+T  R  +   R+ + +    +D +P   +  D  G   F N+   +
Sbjct: 287 NGRPRGFVKILRDLTESRLQQARARQTEERYRTLVDLSPQMVWQCDAQGQLSFCNSYWCE 346

Query: 246 WLGCAPEDLVEGGRRLHDVLAHPPASSAPYDLLEGGGLEQRGEIAMDGLQG--RRFQAYV 303
           + G   E  +  G       +   A+   +    G  L  R E+ +  + G  R FQA  
Sbjct: 347 FTGLDEEQSLGEGWLAAIAASEREATVEQWRQAMGRELPCRLELPLQDVDGSLRWFQANA 406

Query: 304 AQSVVRGEDGRISHTRSVVRDLTPEREWQEALRLSEQRFQRFFED-APIGIALVDEVGRL 362
           A   V   DG + H   V +D+   R   E  RL  + F R   D A  G   +D  G +
Sbjct: 407 AP--VYDADGSLLHWICVAQDVDSRRR-SEMQRLESEAFTRLLLDSANEGFYSIDRSGAV 463

Query: 363 AECNQAFLALIG-SEAGNVLGRGMADLI 389
             CN AFL L+G +    VLGR +  LI
Sbjct: 464 TLCNDAFLNLLGFTSRDEVLGRQLHQLI 491



 Score = 52.0 bits (123), Expect = 3e-10
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 76  IRMVRARRRVARVGSLLGSALEGLPSGQLVCDGAGHVVFVNSTFRSLTGWSE----GEPP 131
           ++  RAR+   R  +L+  +    P     CD  G + F NS +   TG  E    GE  
Sbjct: 305 LQQARARQTEERYRTLVDLS----PQMVWQCDAQGQLSFCNSYWCEFTGLDEEQSLGEGW 360

Query: 132 LRALERQFADDADSADAFRRLCERVKGGYSGSIELAVRQQGRAAEWRRIQGQPIDGHAGA 191
           L A+    ++   + + +R+   R        +EL ++    +  W +    P+    G+
Sbjct: 361 LAAIAA--SEREATVEQWRQAMGRE---LPCRLELPLQDVDGSLRWFQANAAPVYDADGS 415

Query: 192 VMWRV---EDITARR--ELEQVTRREQTQLVDFMDHAPIGFFSVDQDGHFQFVNATLAKW 246
           ++  +   +D+ +RR  E++++     T+L+  +D A  GF+S+D+ G     N      
Sbjct: 416 LLHWICVAQDVDSRRRSEMQRLESEAFTRLL--LDSANEGFYSIDRSGAVTLCNDAFLNL 473

Query: 247 LGCAPEDLVEGGRRLHDVLAHPPASSAPY 275
           LG    D V G R+LH ++ H  A  +PY
Sbjct: 474 LGFTSRDEVLG-RQLHQLIHHSHADGSPY 501



 Score = 44.7 bits (104), Expect = 4e-08
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 312 DGRISHTRSVVRDLTPEREWQEALRLSEQRFQRFFEDAPIGIALVDEVGRLAECNQAFLA 371
           +GR      ++RDLT  R  Q   R +E+R++   + +P  +   D  G+L+ CN  +  
Sbjct: 287 NGRPRGFVKILRDLTESRLQQARARQTEERYRTLVDLSPQMVWQCDAQGQLSFCNSYWCE 346

Query: 372 LIGSEAGNVLGRGMADLIVPAERAMVTERLTAVQGGSDPAAPLEVRLTGGRELVAQLYAR 431
             G +    LG G    I  +ER    E+     G   P   LE+ L   +++   L   
Sbjct: 347 FTGLDEEQSLGEGWLAAIAASEREATVEQWRQAMGRELPCR-LELPL---QDVDGSLRWF 402

Query: 432 RLGGVGPEGAAGLILHFI----DMTERKGLEAQFAQSQ 465
           +        A G +LH+I    D+  R+  E Q  +S+
Sbjct: 403 QANAAPVYDADGSLLHWICVAQDVDSRRRSEMQRLESE 440