Pairwise Alignments

Query, 841 a.a., histidine kinase from Azospirillum brasilense Sp245

Subject, 648 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  273 bits (698), Expect = 2e-77
 Identities = 197/547 (36%), Positives = 286/547 (52%), Gaps = 45/547 (8%)

Query: 320 SVVRDLTPEREWQEALRLSEQRFQRFFEDAPIGIALVDEVGRLAECNQAFLALIGSEAGN 379
           + +R L   R+ + ALR SE RF+  F      IA++D    L ECN AF  LIG  A +
Sbjct: 115 ATLRTLLRVRDTERALRDSEARFREIFIHVAAPIAVLDADLGLHECNHAFELLIG--AAS 172

Query: 380 VLGRGMADLIVPAERAMVTERLTAVQGGSDPAAPLEVRLTG-GRELVAQLYARRLGGVG- 437
                ++++  P + A+V E    +Q G     PL++R+ G  RE   Q+   R  G+G 
Sbjct: 173 PAAALLSEVFAPGQEALVAELRAHLQAGERWRTPLQMRVNGETRETEWQISPYRTPGLGL 232

Query: 438 -------------------PEGAAGLILHFIDMTERKGLEAQFAQSQKMQAVGQLAGGVA 478
                                     + H  ++ ER   E Q  Q+QKM A+G+L GG+A
Sbjct: 233 VFVEDVTEQRHRERAQRQEIANTTSKLAH--EVAERARTEEQLLQAQKMDALGKLTGGIA 290

Query: 479 HDFNNLLTAMIGFCDLLLLRHKPG--DQSFSDIMQIKQNANRAANLVRQLLAFSRQQTLQ 536
           HDFNNLLT +I   +L+  R   G  D           +A  AA+L  +LLAF+R+Q L 
Sbjct: 291 HDFNNLLTGIITGIELMKQRIIEGRADSVLRFADASLSSARSAASLTNRLLAFARKQPLD 350

Query: 537 PRILSVTDVLAELGNLMRRLIGENIELKMLHGRDIGYVKVDQNQLEQVIINLVVNARDAM 596
            R L++ + +  L +L+RR IGE I L      +    +VD +Q E  ++NLV+NARDA+
Sbjct: 351 ARALNINERIRSLEDLLRRTIGERITLTFDFTDEPAVARVDVSQFESALLNLVINARDAL 410

Query: 597 AGGGRLTIVTSNHVVEQAQRREHETIPAGDYVSIEVIDTGCGIPKENLQRIFEPFFTTKG 656
             GG + I  S  + + +Q +E   + AG Y+ + V D G GI    L ++F+PFFTTK 
Sbjct: 411 PEGGHIRI--STFLSDGSQTQE---LAAGRYIGLCVGDDGTGIEPGVLDKVFDPFFTTKP 465

Query: 657 VGSGTGLGLSTVYGIVRQTGGFVLVESEKGEGTTFTILLPRHKGE---ARPDQGEPRERR 713
            G GTGLGLS++YG   Q+GG   + S  G GT  T+LLP   GE   A P   +   R 
Sbjct: 466 QGRGTGLGLSSIYGFALQSGGDASIRSTLGVGTEVTLLLPAASGEAIVASPIGADSSAR- 524

Query: 714 GSDLTGSGTIMLVEDEDAVRVFSARALRNKGYQVLEAKNGEAALQQIGTDGSRIDLLITD 773
              L G   +++VED  +VR+  A  L   GY+  +A + E A   +  D S I+LL+TD
Sbjct: 525 ---LAGHEHVLVVEDMPSVRMLVAETLIEAGYRCSQAGDVETAQALLEADTS-IELLLTD 580

Query: 774 VVMPQMDGPTLARHVRQVRPDMRVIFISGYAED---RLGEIDGVEVAHFLPKPFSLKQLA 830
           V +P++ G  LA+  R+ RP + VI I+GYAE+   R G ID  E    + KPF    L 
Sbjct: 581 VGLPRLSGRQLAQWARRARPGLPVILITGYAENAASREGFID--ERMDLVLKPFEAADLL 638

Query: 831 SKVKEVI 837
           SK++ ++
Sbjct: 639 SKIRGLL 645



 Score = 43.1 bits (100), Expect = 5e-08
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 723 IMLVEDEDAVRVFSARALRNKGYQVLEAKNGEAALQQIGTDGSRIDLLITDVVMPQMDGP 782
           +++V+D    R    R L   GYQVLEA  G   L  +    +  D LI DV +P M G 
Sbjct: 7   LLIVDDNATTRYAMRRVLERHGYQVLEAGTGSEGLALV----AGADALILDVNLPDMSGF 62

Query: 783 TLARHVR 789
            +AR +R
Sbjct: 63  DIARQLR 69