Pairwise Alignments

Query, 841 a.a., histidine kinase from Azospirillum brasilense Sp245

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  273 bits (698), Expect = 3e-77
 Identities = 203/626 (32%), Positives = 305/626 (48%), Gaps = 91/626 (14%)

Query: 277 LLEGGGLEQRGEIAMDGLQGRRFQAYVAQSVVRGEDGRISHTRSVVRDLTPEREWQEALR 336
           + E G L++R  +   G  G    A         E GR       V ++T ++  ++ALR
Sbjct: 252 ITERGNLDERYRLR--GENGATRWALARGRCHCDEQGRPLRFPGAVMNITSQQASEDALR 309

Query: 337 LSEQRFQRFFEDAPIGIALVDEVGRLAECNQAFLA--------LIGSEAGNVLG-RGMAD 387
             E   +   +  P+ I  +D   R    N+ +          L+G  A  VLG RG A+
Sbjct: 310 QREAELKMITDALPVLIGYIDSEERFRFNNRYYTEWFGHSTEWLLGKTAREVLGERGYAE 369

Query: 388 LIVPAERAM--------------------------------------------VTERLTA 403
             V    A+                                            VTER  A
Sbjct: 370 RQVNIRAALAGQDVTFEAYSPHRDGQPRRMLVHYLPRRDCHANVLGFFVMALDVTERWRA 429

Query: 404 VQGGSDPAAPLEVRLTGGRELVAQLYARRLGGVGPEGAAGLILHFIDMTERKGLEAQFAQ 463
            Q   +    LE R+    + +A++Y R L                +M  R+  +    Q
Sbjct: 430 EQALRELNETLESRIQERTQALAEVYERLLK---------------EMASREQAQEALRQ 474

Query: 464 SQKMQAVGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPG----DQSFSDIMQIKQNANRA 519
           +QKM+AVGQL GG+AHDFNN+LT +IG  DL+    + G     Q F D      +ANRA
Sbjct: 475 AQKMEAVGQLTGGIAHDFNNMLTGIIGGLDLIQRYIQSGRHGETQRFIDAAVT--SANRA 532

Query: 520 ANLVRQLLAFSRQQTLQPRILSVTDVLAELGNLMRRLIGENIELKMLHGRDIGYVKVDQN 579
           A L  +LLAF+R+Q L  + + +  ++  + +L+ R +G +I +     + +  V  D+N
Sbjct: 533 AALTHRLLAFARRQPLNLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQQGLWPVSSDEN 592

Query: 580 QLEQVIINLVVNARDAMAGGGRLTIVTSNHVVEQAQRREHETIPAGDYVSIEVIDTGCGI 639
           QLE  ++NLV+NARDAM  GG L + T N  VE   + E   + AG YV + + D+GCG+
Sbjct: 593 QLESALLNLVINARDAMPDGGSLLLETRN--VELYSQGEVGDLAAGRYVILRLTDSGCGM 650

Query: 640 PKENLQRIFEPFFTTKGVGSGTGLGLSTVYGIVRQTGGFVLVESEKGEGTTFTILLPRHK 699
             + L  +FEPFFTTK +G GTGLGLS VYG  RQ GG + + SE GEGT  ++ LP ++
Sbjct: 651 SAKVLASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYLPVYE 710

Query: 700 GE------ARPDQGEPRERRGSDLTGSGTIMLVEDEDAVRVFSARALRNKGYQVLEAKNG 753
            E      A+  +G  R ++G       T+++VED+ AVR+     L   GYQ LEA +G
Sbjct: 711 EEGVAALPAKEIEGPLRAKQGE------TVLVVEDDPAVRLLVIDVLEMLGYQALEAADG 764

Query: 754 EAALQQIGTDGSRIDLLITDVVMPQMDGPTLARHVRQVRPDMRVIFISGYAEDRLGEIDG 813
            AA+ +I    + +D+L+TDV +P M+G  LA   RQ RP + V+F++GYA+        
Sbjct: 765 NAAI-RILESSAAVDMLVTDVGLPGMNGRQLADAARQQRPGLPVLFMTGYAKQAASSDFL 823

Query: 814 VEVAHFLPKPFSLKQLASKVKEVIRD 839
                 + KPF+L  LA +V +++ +
Sbjct: 824 EPGMDMISKPFNLDALAKRVCDMLME 849



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 181 QGQPIDGHAGAVMWRVEDITARRELEQVTRREQTQLVDFMDHAPIGFFSVDQDGHFQFVN 240
           QG+P+    GAVM    +IT+++  E   R+ + +L    D  P+    +D +  F+F N
Sbjct: 285 QGRPLR-FPGAVM----NITSQQASEDALRQREAELKMITDALPVLIGYIDSEERFRFNN 339

Query: 241 ATLAKWLGCAPEDLVEGGRRLHDVL 265
               +W G + E L+  G+   +VL
Sbjct: 340 RYYTEWFGHSTEWLL--GKTAREVL 362