Pairwise Alignments

Query, 653 a.a., RNA polymerase sigma factor RpoD from Azospirillum brasilense Sp245

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score =  559 bits (1440), Expect = e-163
 Identities = 325/630 (51%), Positives = 412/630 (65%), Gaps = 33/630 (5%)

Query: 31  VKKMIARGKERGYVTYDELNAALPQDTSSSEQIEDTMAMLSEMGINIVESEEQD-----S 85
           +K ++ RGKE+GY+TY E+N  LP+D   S+QIED + M+++MGI ++E          +
Sbjct: 9   LKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLA 68

Query: 86  EGNANADGEGEGRSAGNLD--DDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 143
           E N N D + E  +A  L   + +IGRT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 69  ETNNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128

Query: 144 REMMIGAICESPLTIRAILEWHDALMEGKMLLRDIIDLDATYGGGPDGEEIPEGLAEPVE 203
              +  ++ E P  I  +LE +D +   +  L D+I    T    P+ EE    LA    
Sbjct: 129 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI----TGFVDPNAEE---DLAPTAT 181

Query: 204 AATEETEEERPPRPEGESEEEGDEDGDNSLSLSAMEAALKPQVIETFEKIKTTYDKLHKL 263
               E  +E     E E EEE D+  D+  S+    A       E F +++T Y+    L
Sbjct: 182 HVGSELSQEEMDDDEDEDEEEDDDSSDDDNSIDPELAR------EKFAELRTQYE----L 231

Query: 264 HEGRIAAIQRGEDVAKQSDKKYDKLKTEMVELMNTVRLNNQRIEQLVEQLYALNRKLTGF 323
               I A  R    A++   K       + E+    RL  ++ + LV  +  +  ++   
Sbjct: 232 TRDTIKAKGRSHAAAQEEILK-------LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQ 284

Query: 324 EGKLLRMATD-CRVKREDFLNHYFGHELDPNWLERIRGLNPKTWGKFYDKYEADIRKTRD 382
           E  ++++  + C++ +++F+  + G+E    W      +N K W +     + D+++   
Sbjct: 285 ERIIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMN-KPWSEKLLDVKEDVQRGLM 343

Query: 383 GVSSISDEAKLPISEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFL 442
            +  I  E  L I + + I   +  GE +A RAKKEMVEANLRLVISIAKKYTNRGLQFL
Sbjct: 344 KLQQIEQETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 403

Query: 443 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 502
           DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
Sbjct: 404 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 463

Query: 503 LVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDF 562
           L R SRQML E+GREPTPEELAER++MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDF
Sbjct: 464 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 523

Query: 563 IEDKNAVLPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNV 622
           IED    LPLD+A   +LR  T  VLA LT RE +VLRMRFGI MNTDHTLEEVG+QF+V
Sbjct: 524 IEDNTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDV 583

Query: 623 TRERIRQIEAKALRKLKHPSRSRKLRSFLD 652
           TRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 584 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 613