Pairwise Alignments

Query, 848 a.a., histidine kinase from Azospirillum brasilense Sp245

Subject, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  222 bits (565), Expect = 5e-62
 Identities = 143/410 (34%), Positives = 207/410 (50%), Gaps = 25/410 (6%)

Query: 444 PGPDGQPEAVVSSVTDISAIKSMERDLNVALD----------------------AKERFM 481
           P  DG  E  V+ VT+    +     LN  L+                      +K++++
Sbjct: 141 PDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERTCELREARDAAEAANLSKDKYL 200

Query: 482 AAASHDLRQPAQALTLLSGILLKEPIPEDARRIATQLRDTVASLGGLLDCLLDISKLEAG 541
           AAASHDL QP  A  LL   L +  +P+    +  +    +     LL  LLDISKL+  
Sbjct: 201 AAASHDLLQPLNAARLLISTLRERQLPQSELHLVERAHLALEGAEDLLTDLLDISKLDQA 260

Query: 542 LVTPHSAPVEVGSIMERLHGEFRAVAASSGLTLRTVPVRLGVCTDGGLLERVLRNLLTNA 601
            + P      +  I+  L  EF+ VAA+ GL L     R  +  D  LL R+LRNLL+NA
Sbjct: 261 AIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNLLSNA 320

Query: 602 IRYTRQGRVLFGARRRGGALRFEVWDTGIGIPESQIDRIFQDFYQIGNVARDRREGLGMG 661
            RYT  G VL GAR+RG  LR EVWDTG GIPE  +  IF +F Q+G      R G+G+G
Sbjct: 321 CRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSGVGLG 380

Query: 662 LSIARRLVHMLGGTIEVTSAPGKGSCFAVTLPQGAILDERHCGDSPDDSAAGSGEVDGDA 721
           L+I  R+ +ML   + V S PG+GS F++ +P  A +  R         A   G+     
Sbjct: 381 LAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSA--VTPVIAPQLGDPLPGR 438

Query: 722 SVLLVEDDAVIRMALALMLDGWGYRVTEAGSVAEALELVDGTLAPDLVLTDYRLPDGDTG 781
            +L+++++  I  ++A +L+ WG  V  A     A+  + G +APD +L DY L  G TG
Sbjct: 439 RLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALGG-VAPDAILADYHLDHGSTG 497

Query: 782 LMLMDTLRRRFGPDLPGVLLTGDTSSDRLREAAGAQCALLHKPIQPDDLR 831
             ++  LR RF   LP V++T D S    R+  G    +L+KP++P  +R
Sbjct: 498 WDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMR 547



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 65/264 (24%), Positives = 90/264 (34%), Gaps = 30/264 (11%)

Query: 52  ELRTAQQALEASRIQYLQLFQSVPLACFTVNAAGIICEANVAAERQFGLPLRRLKGRPLT 111
           EL    + LEA R +Y  LF+      F  +    I  AN A  R  G          LT
Sbjct: 30  ELVARLEELEAERNRYKWLFEHAVHGIFQASLQEGIRAANPALARMLGYETAEDALWTLT 89

Query: 112 LMVESLDHGRLFTALARLRDSGQWTRQEYAFVGAHSAI---DGLTDARVVELEAGPDGVD 168
                L H         LR       Q+    G  + +   DG     ++ L   PD  +
Sbjct: 90  ----DLSHHLFIGGEEELRQIRHTLSQQNGLFGYETRLRRKDGSAIYVIMNLLLKPD--E 143

Query: 169 KGDVLLTITDVTERNAWVSELQDARDEAERTRAAYHHILQAVADGICGL-DARGAVTFVN 227
            G V   + DVTER      L    +E E          Q VA+  C L +AR A    N
Sbjct: 144 DGLVEGFVADVTERKLAQLRLLQLNEELE----------QRVAERTCELREARDAAEAAN 193

Query: 228 AAAQSMTGFGASELVGRSFAA--LIGGDAEEEGRRALTLSLADGLVRQVGDGRLRRQGGE 285
            +        + +L+    AA  LI    E +        L    +  V    L  +G E
Sbjct: 194 LSKDKYLAAASHDLLQPLNAARLLISTLRERQ--------LPQSELHLVERAHLALEGAE 245

Query: 286 DFVAELTVSPILQNGAITGAVVAF 309
           D + +L     L   AI   + A+
Sbjct: 246 DLLTDLLDISKLDQAAIKPDIDAY 269