Pairwise Alignments

Query, 366 a.a., ABC transporter substrate-binding protein from Azospirillum brasilense Sp245

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  315 bits (806), Expect = 2e-90
 Identities = 163/368 (44%), Positives = 236/368 (64%), Gaps = 9/368 (2%)

Query: 1   MKRFALSVIGAVAAIAIAGPALAQAKKPVNIYIWNDYLGESTLADFTKATGYDTKVDLYD 60
           M   AL   G +A++A+      QA++ V +Y W+DY+ E TL +F K TG     D++D
Sbjct: 7   MTTLALVTAGTLASVAV------QAEEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFD 60

Query: 61  SLELLEQKVLVGKSGYDVIVPTAEPTLSRMIQAKVVAPLDKAKIPNLKNVDPKVLKLLEN 120
           S E++E K+L G+SGYD++VP+    L++ I+A    PLD++K+ N KN++  ++KLLE 
Sbjct: 61  SNEVVEAKLLSGRSGYDIVVPSNH-FLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEK 119

Query: 121 SDPGNKFAVPYLGGTVGIAIIPEKIKAVAPD--VPLDSWDLIFKPEVAKKVAACGITVMD 178
           +DPGN++AVPYL GT GI     K+KA   +   P +S +LIF P+ A+K++ CG  ++D
Sbjct: 120 ADPGNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLD 179

Query: 179 SAIDVIPSVLNYLGLDPNSEKKEDLDKVEKTLLAVRPYIKQFVTGQNINILAGGDACVVM 238
           SA D++P  + YLGLDPNS K ED +K  + L  +RPY+  F + + I+ LA GD CV  
Sbjct: 180 SADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAY 239

Query: 239 AYNGDAIQGAARAEEAKNGVKVEYITPKEGVQVWWDTLAIPADAPNKEGAHAYINFILDP 298
            ++GD  Q AARA+EA NG K+ Y  PKEG  +W+D LAIPADA N E AH  IN++L P
Sbjct: 240 GFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRP 299

Query: 299 ANIAAVSNTVSYANAVPASLASVDEGVKTNPAVFLPENSSLKLFALKSIKQTTDRARTRV 358
             IA +SN V+YAN    +   VDE ++ +PA++ P+    KL+  +       R  TRV
Sbjct: 300 EVIAPISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDKLYIGEIRPLKIQRVLTRV 359

Query: 359 WTKVKTGK 366
           WTKVK+G+
Sbjct: 360 WTKVKSGQ 367