Pairwise Alignments

Query, 1370 a.a., macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. from Acidovorax sp. GW101-3H11

Subject, 1295 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella loihica PV-4

 Score = 1046 bits (2706), Expect = 0.0
 Identities = 591/1342 (44%), Positives = 815/1342 (60%), Gaps = 133/1342 (9%)

Query: 32   ITFPDSLPVSGKREEIMAAITKHQVIIVCGETGSGKTTQLPKIALALGRGKCNAKPGQKG 91
            I++PD+LPVS KR EI  AI  +QV+IV GETGSGKTTQLPKI L LG G          
Sbjct: 68   ISYPDALPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRG------- 120

Query: 92   QLIGHTQPRRIAASSVAKRIAEELNTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAET 151
             LIGHTQPRR+AA SVA R+AEELN+PLG+VVGFKVRF D +   + +KLMTDGILLAE 
Sbjct: 121  -LIGHTQPRRLAARSVATRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAEL 179

Query: 152  QTDPLLKAYDTIIIDEAHERSLNIDFLLGYIRQILPRRPDLKVIVTSATIDADRFAKHFE 211
             +D  L  YDTIIIDEAHERSLNIDF+LGY++ +L RRPDLKVI+TSATID +RF+KHF 
Sbjct: 180  SSDKYLDQYDTIIIDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDVERFSKHFN 239

Query: 212  SAKGPAPVIMVSGRTFPVEQRWRPF--EETRDHGLNEAIADGVDELWAGNAAGDILIFLP 269
            +A    PVI VSGRT+PVE R+RP   E+  D  L + I   V+EL A    GDILIFL 
Sbjct: 240  NA----PVIEVSGRTYPVETRYRPLVGEQDEDLDLTDGIFAAVEELMA-EGPGDILIFLN 294

Query: 270  GEREIREAADHLRKHLSHQPVMRNAEVLPLFARLSQAEQDRIFDGHTGRRIVLATNVAET 329
            GEREIR+ AD L K        R+ EVLPL+ARLS  EQ ++F  H GRRIVLATNVAET
Sbjct: 295  GEREIRDLADQLNKQQ-----YRDTEVLPLYARLSYGEQSKVFKSHRGRRIVLATNVAET 349

Query: 330  SLTVPGVRYVIDAGTARVKRYSFRSKVEQLLVEPVSQAAANQRAGRCGRVANGICIRLYD 389
            SLTVPG++YVID GTAR+ RYS+R+KV++L +EP+SQA+ANQR GRCGRVA GICIRLYD
Sbjct: 350  SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYD 409

Query: 390  EADFNSRPRFTDPEILRSSLAGVILRMKSLHLGDVGQFPFIEAPSGRAIADGYQLLSELG 449
            EADFN+RP FTDPEILR++LA VIL+M S+ LGD+  FPFI+ P  R I DG+ LL EL 
Sbjct: 410  EADFNNRPEFTDPEILRTNLASVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQ 469

Query: 450  AVDDAN---ELTPMGVELSKLPLDPRVGRMILEARERRALDEVLVIASALSVQDVRDRPL 506
            +V       +LTP+G +L+ +P+DPR+ RM+++A+E   L E LVI + LS+QD R+RP+
Sbjct: 470  SVRKHKGQLQLTPLGRQLASIPVDPRLARMVVQAKEYGCLHETLVITAGLSIQDPRERPM 529

Query: 507  EAQQQADQAHAKFDDEKSEFSGYLKLWKWINEARGGAPSLPSARAQKAMAQQKAPSQAHL 566
            + +Q AD+AH +F+D+ S+F  ++KLW  I E                  QQKA      
Sbjct: 530  DKKQAADEAHRRFNDKDSDFIAWVKLWDHIKE------------------QQKA------ 565

Query: 567  PVAQRSAAAAPVPAVASVAAPAPTHKLSNRQYEQLLRQNFISIRRLREWRDIHTQLLTVV 626
                                      LS  Q+ +L +Q F++  R+REW+D++TQL   V
Sbjct: 566  --------------------------LSASQFRKLCKQEFLAYLRVREWQDLYTQLRQAV 599

Query: 627  TEHKWQINTQPASYEQIHLSMLSGLLGNIGVKSDEEDWYLGARGIKFYKHPGAHLSKKPG 686
             + KW++N++PA YE +H S+L+GLL +IG K D+++ YLGAR  KF+  PG+ L+KK  
Sbjct: 600  HDLKWKLNSEPADYELLHKSLLTGLLSHIGFK-DKDNEYLGARNRKFFVFPGSPLAKKGP 658

Query: 687  RWIVAAELVETTRLFGRGIAAIEPQWLEQVGGHLLKKQMLDPHWEKKAAQVTALERATLY 746
            +WI+AAE+ ET+RLF R  A I+P+W+E + GHL+KK  ++PH+E K   V ALE   LY
Sbjct: 659  KWIMAAEMTETSRLFARCCAKIQPEWVEPLAGHLVKKSYVEPHFEAKQGSVVALENQQLY 718

Query: 747  GIVVYNNRRVDFGKVDPQGAREVFLREALVGGEWETRLPFLAANQKLIAKVEELEHKSRR 806
            G+ + N RRV +G V+P  ARE+F+R AL  GE  T+  F   N+ LI  +E LEHKSRR
Sbjct: 719  GLTIVNRRRVQYGPVEPVEAREIFIRSALAEGELRTKEAFFVNNRALIDDIEALEHKSRR 778

Query: 807  QDVLVDDELIYAFYDQQVPQDVCSGTTFERWYKDASRANPELLKLTRDELMRHEAAGITT 866
            +D+LVD++ +  FY+ ++P+ + +      W+K   +  P LL   R++LM+     I+ 
Sbjct: 779  RDILVDEQALVDFYEARIPEGIYNAPKLLTWWKQEKKRQPHLLDFEREQLMKRSDEHISA 838

Query: 867  SAFPKTVRLGGVDCTATYLHEPGDARDGITVTIPLFVLNQVSDERCEWLVPGMLKDKIQA 926
              FP +   G  +   +Y  EP D  DG++V +P+ +LNQ+  +  +WLVPG+ ++KI A
Sbjct: 839  LDFPDSWHQGNFNLPLSYHFEPADVDDGVSVHLPVALLNQIEAQGFDWLVPGLREEKITA 898

Query: 927  LLKSLHQRPRSRFVPLPESAARLAELFNAPERFGTGSLTDALLKQVRDETSLDVKRADFK 986
            L+KSL +  R  FVP P+ A    +           SL +A+ KQ+   + + +   DF 
Sbjct: 899  LIKSLPKTLRRNFVPAPDYARACLQAMANTNSSSETSLLEAMCKQLLRMSGVRISVDDFD 958

Query: 987  LDMLSPHLFMNFRVVDEHGRQLGHGRNLGALKAEWGAKARGAFQALAGLKLGGAAAEEQK 1046
            L  L+PHL +NF+V D+ G+ +  GR L  LK                            
Sbjct: 959  LTQLAPHLLINFKVEDDKGKLIAQGRELEQLK---------------------------- 990

Query: 1047 SESKMPSARDGKAQAAIKSGANSPAQPAQPSPAAQATPSAPAGQRFTSWTFGELPELMEI 1106
                      G+   AI++ A S  + ++                 T W+FG+LP+  E 
Sbjct: 991  ------DKLQGRVTQAIRNVAESGIEQSE----------------LTQWSFGDLPKQYEK 1028

Query: 1107 KKAGQTLIGFPALIDGGDAVSIEVFDEPEVAAAKHRAGLRRLFALQIKDALKYLEKNIPD 1166
            K+    +  FPAL+D  D+V+I++FD+   A   H+AGL+RL  L +   +K+L+  +P+
Sbjct: 1029 KRGNFQVKAFPALVDNKDSVAIKLFDDEHEAGRCHKAGLQRLLLLNMPSPVKHLQNTLPN 1088

Query: 1167 LQKMAVAYMPLGTQEELRTQIIDVALDRAFLLDPLPTDEYA---FKRRVEEGRGRLTLIA 1223
              K+A+ + P G  + L   I+  A+ +  LLD    D  +   F++  +  R  L   A
Sbjct: 1089 KAKLAMYFNPFGQVQYLIDDILSAAVQQ--LLDEKGLDVRSAEQFEQAKDVVRQDLNPTA 1146

Query: 1224 NEVARLAGTILIEYAAAARKIKD--TKNAPDATADALQQLQRLVPKQFIAQAPWGQLAHF 1281
             ++A     IL  Y    +++K   + +   A +D   QL  LV K F+ Q  W +L+  
Sbjct: 1147 AKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDNLVFKGFVEQCGWQRLSDL 1206

Query: 1282 PRYLKAITLRLDKVRADPARDAAKLAELRPQEQRYWRLVAE--RKGAVDARMQELRWLLE 1339
             RY+KAI  RLDK+  DP RD   L  +   +Q     +A+  R   V   +QE RW++E
Sbjct: 1207 IRYIKAIDNRLDKLPVDPNRDRLHLHSINNVQQTLAAQLAKVPRSAPVPEALQEARWMIE 1266

Query: 1340 ELRVSFFAQELRTPQPVSVKRL 1361
            E RVS FAQ L T  P+S KR+
Sbjct: 1267 EYRVSCFAQVLGTAYPISEKRI 1288