Pairwise Alignments

Query, 559 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Acidovorax sp. GW101-3H11

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  602 bits (1553), Expect = e-177
 Identities = 307/557 (55%), Positives = 395/557 (70%), Gaps = 6/557 (1%)

Query: 3   DRPWLAAYPQGVPADIDTSQYTSLVALMDEAFKKYADRVAYSFMGKEVTYGQTDSLSSAF 62
           D+PW+   P+ VPA+I+  QY+SL+ + + A  KYAD+ A+  MG  +TY + +  S AF
Sbjct: 2   DQPWIRHLPKDVPAEINVDQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEERSRAF 61

Query: 63  AAYLQS-LGLVKGDRVAIMMPNVPQYPVAVAAVLRAGFVVVNVNPLYTPRELEHQLKDSG 121
           AAYLQ+ L L KGDRVA+MMPN+ QYP+A+  +LRAG VVVNVNPLYTPREL+HQL DSG
Sbjct: 62  AAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLIDSG 121

Query: 122 AKAIVIIENFAATLEQCIAHTPVKHVVLCAMGDQLGLLKGALVNYVVRNVKKMVPAYNLP 181
           AKAIV++ NFA TLE+ +  TPVK V++  +GD L   K  LVN+VV+ +KK+VP Y+LP
Sbjct: 122 AKAIVVVSNFARTLEEVVDQTPVKSVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDLP 181

Query: 182 GAVRFNQAVAQGTRSTLKKPDIKPDDIALLQYTGGTTGVSKGAVLLHRNILANVLQSEAW 241
            A+   + +++G R    KP I  DD+A LQYTGGTTGVSKGA+L H N++ANVLQ+   
Sbjct: 182 HALSMRETLSRGRRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANGA 241

Query: 242 NSPVMSKVPAGEQPTAVCALPLYHIFAFTVNMMLSMRTGGKTILIPNPRDLPAVLKELSK 301
            SP +           V ALPLYHIFA TVN +L +  G + +LI NPRD+P  + EL K
Sbjct: 242 YSPAL----RDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKK 297

Query: 302 HTFHSFPAVNTLFNGLANHPDFNTVNWKNLKVSVGGGMAVQGAVAKLWLEKTGCPICEGY 361
           + F +   VNTLFN L N  DF+ +++  LK+S+GGGMAVQ AVA  W   T   + EGY
Sbjct: 298 YPFTALTGVNTLFNALVNSSDFSELDFSRLKLSIGGGMAVQKAVADKWQNITKTRLLEGY 357

Query: 362 GLSETSPSTSCNPVTATEYTGTIGVPIPGTYMKLIDDEGREITTLGEPGEIAIKGPQVMA 421
           GL+E SP  +C P     Y G+IG P P T +++ DD G  +   GE GE+  KGPQ+M 
Sbjct: 358 GLTEASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAG-NVLPQGETGELFGKGPQIMK 416

Query: 422 GYWQRPDETAKVMTDDGYFKSGDIGIMDARGFFKIVDRKKDMVLVSGFNVYPNEVEEVVA 481
           GYWQRP+ETAKV+ +DG+  +GDIG MD +GFF IVDRKKDM+LVSGFNV+PNEVEEVVA
Sbjct: 417 GYWQRPEETAKVIDNDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVA 476

Query: 482 SCPGVLECAVVGVPDEKTGEAVKLVIVKKDPALTEAQVKEFCRRELTGYKQPKVIEFRTE 541
             P V+E A VGVP++ +GE VK+ +VKKD +LT   + + CR  LTGYK PK++EFR E
Sbjct: 477 LHPKVIEVAAVGVPNDASGELVKVFVVKKDKSLTAEDIIKHCRVHLTGYKVPKLVEFRDE 536

Query: 542 LPKTPVGKILRRELRDK 558
           LPKT VGKILRRELRD+
Sbjct: 537 LPKTNVGKILRRELRDE 553