Pairwise Alignments

Query, 678 a.a., DNA ligase (EC 6.5.1.2) from Acidovorax sp. GW101-3H11

Subject, 813 a.a., NAD-dependent DNA ligase LigA from Ralstonia sp. UNC404CL21Col

 Score =  703 bits (1814), Expect = 0.0
 Identities = 389/682 (57%), Positives = 468/682 (68%), Gaps = 58/682 (8%)

Query: 5   LRAQLNHWAHQYYVLDEPTVPDAEYDRVFRELQALEAAHPDLVTPDSPTQRVIGAVMEGL 64
           LRA+LN +AH+YYVLD P+VPDAEYDR++REL+ALE+ HP+L TPDSPT RV GAV+   
Sbjct: 20  LRAELNRYAHEYYVLDRPSVPDAEYDRLYRELEALESEHPELKTPDSPTLRVGGAVLPEF 79

Query: 65  APVRHTVPMLSIHTETDTEATGAQAFDARVRRELGLADADPAIEYVAEPKFDGLAMSLRY 124
           A VRH +PMLSI TETDT A GA+AFDA VRRELGL D DP +EY AE KFDGLA+SLRY
Sbjct: 80  AAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAISLRY 139

Query: 125 ENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTL---PSGVPPLLEVRGEVYMRRADFDA 181
           E G LVQAATRGDG  GEDVT NIRTIRQIPL L      VP +LEVRGEVYMRR DF+ 
Sbjct: 140 ERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDDFEK 199

Query: 182 LNERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLSFFAYGLGAITPPAEGGPVFRTH 241
           LN RQRE+G KTFVNPRN AAGAVRQLD  + A+RPLSFFAYGLG +    +G P   TH
Sbjct: 200 LNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVV-GWKGMP--ETH 256

Query: 242 YEMLQTLKSWGFPVATQVQIAVDATELVAFHQQVGASRDALPYDIDGVVYKVNSLQLQRD 301
             ML  L+++GFPV+ +         LV FH  +G  RD+LP+DIDGVVYKVNSL LQR+
Sbjct: 257 SGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGTKRDSLPFDIDGVVYKVNSLALQRE 316

Query: 302 LGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARLAPVFVGGVTVTNATLH 361
           LGF+TREPRWAVAHKYPAQE  T +E I VQVGRTG ITPVARL PVFVGGVTVTNATLH
Sbjct: 317 LGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLH 376

Query: 362 NLFEIRKKGVRVGDTVIVRRAGDVIPEVVGV---------MPGN------RTGYVPNFQM 406
           N  E+R+K VRVGDTVIVRRAGDVIPEVV V         +PG+      +    P F++
Sbjct: 377 NEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPGSDLFSPQQQPKYPPFEL 436

Query: 407 PTACPVCGSAVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVD 466
           P  CPVCGS VVRE+GEA  RC+GGLFC+AQRKEAI HFA RR MDIEGLG++ +D LV+
Sbjct: 437 PKTCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVE 496

Query: 467 ANVIRTLPDLYRLGLTSLIALERMAE-----------------KSAQNVLAALEKSKQTT 509
            + +  + DLY+L L   + ++R A+                 K A+N+L  ++ SK   
Sbjct: 497 LDYVHGIADLYKLKLEDFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKTPP 556

Query: 510 LPRFLFGLGLRHVGEATAKDLAKHFGTLDAIMDASVEQLLEVNDVGPVVAQSLHTFFAQP 569
           L RFLF LG+RHVGE+TAK LA   G+L  I  A    LL + DVG  VA+++  FFA+P
Sbjct: 557 LARFLFALGIRHVGESTAKTLADWLGSLAIIRRAPAPLLLALPDVGATVAEAIADFFAEP 616

Query: 570 HNREVVEQLRACGVTWPEGPVAERA-----------------PQILAGKTVVLTGTLPTL 612
            N++ ++ L   GV  P+G  A  A                 P++ A +   L    PTL
Sbjct: 617 KNQQALDALLEAGVA-PQGEHAPNAKLREKLEPAELYATLGVPKLTATRAKQLAVAAPTL 675

Query: 613 SREAAKDMLEAAG--AKVAGSV 632
           +  A+ +  + AG  A VA S+
Sbjct: 676 AHLASVEPEQLAGLPADVAASL 697



 Score =  122 bits (305), Expect = 9e-32
 Identities = 99/231 (42%), Positives = 123/231 (53%), Gaps = 23/231 (9%)

Query: 456 LGDKLVDQLVDANVIRTLPDLYRLGLTSLIAL-ERMAEKSAQNVLAAL------------ 502
           LG   + +   A ++  LPD+   G T   A+ +  AE   Q  L AL            
Sbjct: 581 LGSLAIIRRAPAPLLLALPDV---GATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHA 637

Query: 503 --EKSKQTTLPRFLFG-LGLRHVGEATAKDLAKHFGTLDAIMDASVEQLLEVNDVGPVVA 559
              K ++   P  L+  LG+  +    AK LA    TL  +     EQL     +   VA
Sbjct: 638 PNAKLREKLEPAELYATLGVPKLTATRAKQLAVAAPTLAHLASVEPEQLA---GLPADVA 694

Query: 560 QSLHTFFAQPHNREVVEQLRAC-GVTWPEGPVAERAPQILAGKTVVLTGTLPTLSREAAK 618
            SL  + A   +R  + +L A  G      P       +LAGKTVVLTGTLP L+R+ AK
Sbjct: 695 ASLLEWLASHDHRAQLTKLDALRGELLATMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAK 754

Query: 619 DMLEAAGAKVAGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALL 669
            MLEAAGAKV+GSVSKKT +VVAG +AGSKLAKAEEL V VLDEAGMLALL
Sbjct: 755 AMLEAAGAKVSGSVSKKTDFVVAGEDAGSKLAKAEELNVKVLDEAGMLALL 805