Pairwise Alignments

Query, 348 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Acidovorax sp. GW101-3H11

Subject, 326 a.a., putative dipeptide transport ATP-binding protein DppD from Phaeobacter inhibens DSM 17395

 Score =  417 bits (1071), Expect = e-121
 Identities = 203/313 (64%), Positives = 243/313 (77%)

Query: 14  LLEVKNLVVEFPGRRGTLRALDDISFSIAPGEILGVVGESGAGKSLTGAAIIGLLEPPGR 73
           +L +++LVVE P R   L A D +S+ IAPGEILGVVGESGAGKS+ G A+IGLL PP R
Sbjct: 5   VLSIRDLVVEIPTRHARLCATDKVSYDIAPGEILGVVGESGAGKSMAGNAVIGLLNPPAR 64

Query: 74  VASGQILLEGQRIDNLSNEEMRHIRGRRIGAIFQDPLTSLNPLYTVGRQLTETILAHLPV 133
           +  G+I L GQRIDNL  E+MR +RG+ IG IFQDPLTSLNPL  +G QLTET++ HL +
Sbjct: 65  ITGGEIRLNGQRIDNLPREKMRRLRGKEIGMIFQDPLTSLNPLLRIGDQLTETMMEHLEL 124

Query: 134 TPAEARQRAIALLKDTGIPAAEERIDHYPHQFSGGMRQRVVIALALAAEPKLIVADEPTT 193
           T  EAR RAIA L++ GIPAA ERID YPH+FSGGMRQRVVIALAL AEP LI+ADEPTT
Sbjct: 125 TKPEARARAIAALEEVGIPAASERIDSYPHEFSGGMRQRVVIALALCAEPSLIIADEPTT 184

Query: 194 ALDVSIQAQIITLLKNICKSRGAAVMLITHDMGVIAETCDRVAVLYAGRVAEIGPVHDVI 253
           ALDVS+QAQII LLK +C+ RG AVMLITHDMGVIAE  DRVAV+YAGR+AEIG V DV+
Sbjct: 185 ALDVSVQAQIIALLKRLCRERGTAVMLITHDMGVIAEAADRVAVMYAGRMAEIGDVRDVV 244

Query: 254 NKPSHPYTSGLMASIPDMTMDRERLNQIDGAMPRLNAIPKGCAYNPRCPQTFDRCMTERP 313
            +P HPYT GLM S P  +  + RL QI GAMPRL+++P GCA++PRC +  +RC    P
Sbjct: 245 TRPRHPYTDGLMGSTPSASAGQHRLRQIPGAMPRLHSLPPGCAFSPRCERANERCRNSPP 304

Query: 314 DLMPAGSTRAACW 326
             + A + R+ACW
Sbjct: 305 PTLEADNGRSACW 317