Pairwise Alignments

Query, 502 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Acidovorax sp. GW101-3H11

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  286 bits (733), Expect = 9e-82
 Identities = 189/469 (40%), Positives = 243/469 (51%), Gaps = 21/469 (4%)

Query: 29  DSRQIRPGDGFIAWPGAATDGRAHIGDALARGAVACLVE----HEGAEAFVLSGLPVAAL 84
           DSRQ+  G  FIA PG  TDGRA++  A A+GA A LV      E  +     GL +A  
Sbjct: 26  DSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAFF 85

Query: 85  HGLKAATGLIAADWFEHPTQGLDVLAVTGTNGKTSTSWWLAEALNVLSKNELYGHDGCAV 144
             L      +A  ++      L V+ VTGTNGKTS S  +A+   +L        D  AV
Sbjct: 86  Q-LNRQVSAVARQYYALTRGKLRVVGVTGTNGKTSVSQLIAQLTELLG-------DKAAV 137

Query: 145 VGTLGMGTPPALTSTGMTTPDPVRLQRAFRQFADAGRGACAIEASSIGLAEHRMVGTRIR 204
           +GTLG G    L   G TT D VR+      F   G   CA+E SS GL + R+      
Sbjct: 138 MGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFE 197

Query: 205 VALFTNFTQDHLDYHAGMAAYWQAKSMLFDWPGLQAAVVNIDDVRGAELHATLAGRHLDL 264
           VA+FTN ++DHLDYH  M  Y  AK  LF +  L A V+N+DD  G +    +       
Sbjct: 198 VAVFTNLSRDHLDYHGDMDNYAAAKRRLFAFGSLSARVINLDDKVGEQWFDGMGCAT--- 254

Query: 265 WSVSITGPARLAAR--DIGMGDGGLRFTVAEGVQAHVLQTRVIGLYNVANLLGVLAGLRA 322
              S  G A+   R  +      G    +        L+ R++G +N++NLL  L  +  
Sbjct: 255 -GFSCLGHAKADWRFENAHFHHAGFSANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQ 313

Query: 323 LGVPLEHALYACAQLSPVPGRMEQIHQSGQPLVAVDYAHTPDALEKALQALRPIAAERGG 382
           LG  +   + A A+L  VPGRME   +     + VDYAHTPDA+E+AL+A R       G
Sbjct: 314 LGYQVPDLVAAAAKLEAVPGRMECFPRKDGVSLVVDYAHTPDAIEQALKAARHHCE---G 370

Query: 383 RLWCVFGCGGDRDAGKRPLMGAVAQQQADQVVVTSDNPRSEDPAAILHQILQGTIASTAV 442
            LW VFGCGGDRD GKRPLM   A+  AD +V+TSDN RSEDPA IL  +  G  A    
Sbjct: 371 ALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTSDNARSEDPAVILEDMKAGLDAPERA 430

Query: 443 QAEPDRAAAIALAVAAAAPADVVLIAGKGHENTQETAGVHQPFSDMAHA 491
               DR AAI  AV+ A P D++L+AGKGHE  QE AGV   + + A A
Sbjct: 431 LCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQEIAGVKHEYDERALA 479