Pairwise Alignments

Query, 502 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Acidovorax sp. GW101-3H11

Subject, 491 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  316 bits (810), Expect = 1e-90
 Identities = 193/473 (40%), Positives = 256/473 (54%), Gaps = 17/473 (3%)

Query: 26  LQTDSRQIRPGDGFIAWPGAATDGRAHIGDALARGAVACLV-----EHEGAEAFVLSGLP 80
           L  DSR IR GD F+A PG   DGR  I  ALA+GA A LV     + +G       G+ 
Sbjct: 22  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIVAEQGVQ 81

Query: 81  VAALHGLKAATGLIAADWFEHPTQGLDVLAVTGTNGKTSTSWWLAEALNVLSKNELYGHD 140
           +      K  + + A  +       + ++ +TGTNGKTSTS   A+ + +LS        
Sbjct: 82  IYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGK------ 135

Query: 141 GCAVVGTLGMGTPPALTSTGMTTPDPVRLQRAFRQFADAGRGACAIEASSIGLAEHRMVG 200
             AV+GTLG G    L  +G TT D + L R   +FA+ G   CA+E SS GL + R+  
Sbjct: 136 -AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDA 194

Query: 201 TRIRVALFTNFTQDHLDYHAGMAAYWQAKSMLFDWPGLQAAVVNIDDVRGAELHATLAGR 260
               VA+FTN T+DHLDYH  M  Y  AK MLF +  L+  ++N+DD  G    A L   
Sbjct: 195 VPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRHGLLNLDDPIGGAWLAELKNV 254

Query: 261 HLDLWSVSITG--PARLAARDIGMGDGGLRFTVAEGVQAHVLQTRVIGLYNVANLLGVLA 318
              +W  SI     A    +++   D G++ T+        + + ++G +N++NLL  L+
Sbjct: 255 PAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISSPLLGAFNLSNLLAALS 314

Query: 319 GLRALGVPLEHALYACAQLSPVPGRMEQIHQSGQPLVAVDYAHTPDALEKALQALRPIAA 378
            L   G+ +         L PV GRME+   +    + VDYAHTPDA+E+AL ALR   A
Sbjct: 315 ALYLQGMDMRALAAKVPYLVPVAGRMERFTTADNITLVVDYAHTPDAIEQALNALRRHCA 374

Query: 379 ERGGRLWCVFGCGGDRDAGKRPLMGAVAQQQADQVVVTSDNPRSEDPAAILHQILQGTIA 438
              G LWCVFGCGGDRD GKRPLMG  A+Q AD+++VTSDN RSEDP  I+  I+QG   
Sbjct: 375 ---GVLWCVFGCGGDRDKGKRPLMGQAAEQFADRIMVTSDNARSEDPNQIITDIIQGLTH 431

Query: 439 STAVQAEPDRAAAIALAVAAAAPADVVLIAGKGHENTQETAGVHQPFSDMAHA 491
                 E DR AAI   VA A   DV+L+AGKGHE  QE AGV   + + A A
Sbjct: 432 PERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHETYQEAAGVRHDYDERALA 484