Pairwise Alignments

Query, 230 a.a., Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) from Acidovorax sp. GW101-3H11

Subject, 322 a.a., RNA-binding S4 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  105 bits (261), Expect = 1e-27
 Identities = 69/177 (38%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 22  PMTPRLIRFNKPYGVLSQFTAEGKWQGLKDYI--DLPGVYVAGRLDADSEGLLLLTNDGP 79
           P  PRL R++KP G+++    E   + + D +  DLP V   GRLD +SEGLLLLTNDG 
Sbjct: 66  PEPPRLWRYHKPVGLVTTAKDEKGRETVFDALPADLPRVMSVGRLDLNSEGLLLLTNDGE 125

Query: 80  LQAHIADPRFKMEKTYWVQVEGIPDEAALAALRGGVVLNDGPTLPARARLLEPAPAVWDR 139
           ++  +  P     + Y V+V+G P E  LA LR G+ +      P  ARL          
Sbjct: 126 IKRRLELPTTGWLRRYRVRVKGAPTEDDLAPLRAGIEVEGERFKPMEARL---------- 175

Query: 140 TPPIRERKAIPTAWIELIIREGRNRQVRRMTAAVGHPTLRLIRAAIGPHTLDGLAPG 196
                +R     AW+ L +REGRNR++RR   A+G    RLIR + GP  L  L PG
Sbjct: 176 -----DRLQGANAWLTLGLREGRNREIRRAMGALGLVVNRLIRISYGPFRLGELKPG 227