Pairwise Alignments

Query, 814 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Xanthomonas campestris pv. campestris strain 8004

Subject, 802 a.a., DNA gyrase, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  848 bits (2191), Expect = 0.0
 Identities = 455/817 (55%), Positives = 571/817 (69%), Gaps = 37/817 (4%)

Query: 15  YDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADDIVVKIH 74
           Y S  I VL+GLEAVRKRPGMYIGD  DG+GLHHMV+EVVDN++DEALAG+ D   V ++
Sbjct: 6   YTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHSEVILN 65

Query: 75  VDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 134
            DGSV V DNGRG+PVDIH+EEGVSAAEVI+T LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 66  GDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 125

Query: 135 ALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRFKPAVEIFSDVEFHY 193
           ALS+ L L IWRDG  +   +  GE   PLK + +   + GT + F  +  IF+   + Y
Sbjct: 126 ALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFAITTYDY 185

Query: 194 DILARRLRELSFLNSGVKIALIDERG-EGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVIS 252
             L  RLREL+FLNSGV++ L D+RG E R   FHY+GGI  FV +L + KT LH   ++
Sbjct: 186 ATLEHRLRELAFLNSGVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVLHSPPVT 245

Query: 253 VTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLSNYIEQNGI 312
             GE +G++V+++L+WTD+Y ET+ CFTNNIPQ+DGGTH+AGFRG LTR L++Y + +G+
Sbjct: 246 AIGERDGMIVELSLEWTDSYHETVLCFTNNIPQRDGGTHMAGFRGGLTRTLNSYAQDSGL 305

Query: 313 AKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQ 372
            K+ K+TLTGDDMREG+  VLSVKVPDP FSSQTKEKLVSS+VRP VE     RL ++L+
Sbjct: 306 MKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVEAVVVERLGQWLE 365

Query: 373 ENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELFI 432
           E+P EA+ I GK+V+AA AREAAR+AR+LTRRKGALD+A LPGKLADCQ +DPA SELFI
Sbjct: 366 EHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADCQNRDPAQSELFI 425

Query: 433 VEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGTGIGRDE 492
           VEGDSAGGSAKQGR+R  QA+LPLRGKILNVERARFD+ML+S ++GTLI ALGTGIG+D+
Sbjct: 426 VEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTLIAALGTGIGKDD 485

Query: 493 YNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKS 552
           ++  K RYH+II+MTDADVDGSHIRTLLLTFF+RQMPE++E+GY+YI  PPLY+ K+G S
Sbjct: 486 FDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLYRAKRGNS 545

Query: 553 ELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFAGAKEAIARNAHRYD 612
           E YLKDD  L  YL  + ++      A+    + G  L  L+     A+ AIA    +  
Sbjct: 546 EQYLKDDRELEDYLLDTGLDETVYTTAAG-VQMAGPDLRALVERARLARNAIAAMGRKVP 604

Query: 613 PALLTAL-------IDLPPLDVVQLQAEGDVHPTLDALQAVLNRGTLGTARYHLRFDPAT 665
             LL           ++   D     A  DV   +DAL++ L RG  GT           
Sbjct: 605 WVLLEQAAVAGAFHTEIVNDDARASAAAADVARRIDALESPLERGWTGTL---------- 654

Query: 666 DSAAASLVSVRKHMGEEFTQVLPMGAFESGELRPLREVALALHGL--------VREGAQI 717
            +A   +V  R   G   T V+      S E R L  +A AL           +++G QI
Sbjct: 655 -AAGGGMVFQRTLRGVTETHVIDPQVIHSTEARRLDSMAAALREFYEQPGRLRIKDGDQI 713

Query: 718 LRGNKSHPITSFAQAQAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRI 777
           + G    P+T      A      ++G  +QR+KGLGEMN EQLWETT++P+ RRLLQV++
Sbjct: 714 IPG----PMTLINAVMA----AGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKV 765

Query: 778 EDAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814
                A+ +FSTLMGD+VEPRRDFI+DNAL V NLD+
Sbjct: 766 NQVSDAEDVFSTLMGDIVEPRRDFIQDNALNVQNLDV 802