Pairwise Alignments

Query, 1134 a.a., Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) from Xanthomonas campestris pv. campestris strain 8004

Subject, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

 Score =  392 bits (1006), Expect = e-112
 Identities = 327/1118 (29%), Positives = 505/1118 (45%), Gaps = 144/1118 (12%)

Query: 9    FRLYPSNALDTLAALLAEELRRPVPEQPVLQPEVVLIPQVAMRRWLQSTLAAEHGVAANL 68
            F +Y SN ++TL  LL   ++    + P + PE +L+    M +WL+  LA+E GVAANL
Sbjct: 2    FTVYHSNQVETLKILLVHLIKNEPLDDPFI-PESILVQSPGMSQWLKMALASELGVAANL 60

Query: 69   EFLTPGEFVARALERNLG--PADDDLDMATTQWRLYQTLQGELGSDAALAPLAGYLADG- 125
            EF  P  F+ +   + L   P     +     WRL + L  +L       PL  YL D  
Sbjct: 61   EFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP-KLLDRTEFQPLQRYLQDDE 119

Query: 126  DALKPWALAGELGSVFEKYQAWRRDWLLRWESG------ADADDPQARLWRSIAGGRQYR 179
            D  K + LA ++  +F+ Y  +R DW+L WE+G      AD    Q  LWR +      +
Sbjct: 120  DDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPILWRELYAYTHKQ 179

Query: 180  ARRIGQYLDRYARPDGPLPQG------LPKRLFAFAILNVSPDVLRVLATQARVGTLHFY 233
               I    + Y R    L  G       PKRLF F I  + P  +  L        +H  
Sbjct: 180  GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 234  LPTPTQGYWGDLQ-------TLWQRRR----EGGAVALFAE----------QVQE----- 267
            L  P Q YWGD++          Q+R+     G  V + +E           +QE     
Sbjct: 240  LTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQESMHLS 299

Query: 268  ----NPLLQAWGAAGRDFMALVG--DYEVVHPLAEIAAYADPLDAGRRTLAEGGLGDSLL 321
                N LL + G  GRD + L+   D   +    EI                    DSLL
Sbjct: 300  HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQR------------------DSLL 341

Query: 322  RRMQSDLFHRHAP------AVPPVLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDD 375
              +Q+D+ H          A     P++   D SLQ+  CH+ +RE++VLHD+L A  + 
Sbjct: 342  HHIQADILHLQEHQDDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFER 401

Query: 376  ARFDPPLQPREIAVLSPDIDPYVPYLDAVFGGHGSDDGLPYALADASPLASEPLADVFLT 435
               DP L+PR++ V+ PDI+ Y PY+ AVFG    +  +P++++D S     P+   FL 
Sbjct: 402  ---DPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQ 458

Query: 436  LLGLPISRFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHGAGARWGLDAVHRRQHQA 495
            LL LP SR    E+L+LL +  I     +DE      + W+  AG RWGL++    + + 
Sbjct: 459  LLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFEL 518

Query: 496  PGDDAYTWRFALDRLLLGHASGAEDDI-----DGVAPWPQLEGSALAALDTLLRLLRVLD 550
            P  +  TW+F ++R+LLG+A  AE  +       +AP+ Q++G +      L   ++ L 
Sbjct: 519  PASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLS 578

Query: 551  RHQAALAEAMTPVQWRECLLGLLEALIPAAPSAPRAQRALERLRTLIDQFARDAVRAEYA 610
              ++ LA+  +  QWR  L  LLE          + + AL+ +R  +    +    A Y 
Sbjct: 579  ELRSQLAQTQSMEQWRYWLNELLERCFSV---DLQGELALKTIRDSLVNLKQQLADAGYQ 635

Query: 611  GNVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRD 670
              V   ++R      L  +      L G ++F  ++PMR +PFR +CLLGMNDG +P  +
Sbjct: 636  QAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNE 695

Query: 671  PAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGTVREP 730
               G      +L   +RR GDRS RE+ R+LFL+   SA+E  Y+SY+G   +D + R P
Sbjct: 696  MVEGF-----DLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERVP 750

Query: 731  SVLVSELLGSAAQYH------------ADPKAIDALVVRHPLQPFAAAAFGAVGEDGADP 778
            SVLVSELL    Q +            +  + ++ L  ++P+ PF+  AF A        
Sbjct: 751  SVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIA-------- 802

Query: 779  RRFSYRRQWRPAV----DSLAGQRQPLAPWVAGALPADASVLPASVSIDDLRRLFADPAG 834
               S+ R+W PA      S A    PL+ ++           P  + + +L+R +  P  
Sbjct: 803  --GSFAREWLPAARRQGQSSADFLTPLSDYLLEV------SWPMELDLVELQRFWRLPVE 854

Query: 835  QFLRHRLGMRLPDPAGEDSDLEPLLAPTRGLEQYGLQQQVFEAALA----GDADGLY--- 887
             F + RL +    P     D EP      GL  Y L+ ++ E  LA     + D +    
Sbjct: 855  YFFKRRLKVSFEPPLAVLEDDEPFALD--GLSAYQLRDELVENLLACRDGAERDQVVAQF 912

Query: 888  -ERLRARALLPSGPLGRRQLDERLRQLRPYADVFRQWRGEAPAQSQ----RLQVEIDGTN 942
             ++ RA+  LP    G  +L +  +Q    A+    +    P + +    RLQ   DG  
Sbjct: 913  AKQQRAQGKLPVAAFGDLELAQSAQQALALAEKI-GFLCHQPLEDEEIDLRLQPFDDGRE 971

Query: 943  VHGRVPGW----YANGVGRVQVGALSGRSAIRDGLEWLLLRAAGERV-PFVRFFEHDDSL 997
            V  R  GW    Y +G+ R + GA+     +   ++ L L A+G+ V   +  +E  + +
Sbjct: 972  VLLR--GWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKEGV 1029

Query: 998  GPHPIDPEPLSQTQARAALGELLQLYRQGLQTPLAFAP 1035
              H + P      QA+  L EL+ L+ QG+  PLA+ P
Sbjct: 1030 -QHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFP 1066