Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  804 bits (2076), Expect = 0.0
 Identities = 411/722 (56%), Positives = 530/722 (73%), Gaps = 5/722 (0%)

Query: 1   LLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNK 60
           LL+ LN AQR+AV+AP G  LVLAGAGSGKTRVL+HRIAWLN+V+    H I +VTFTNK
Sbjct: 8   LLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVTFTNK 67

Query: 61  AAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR 120
           AA EMR R +  L    +GMW+GTFHGLAHRLLR HWQ+A+L + FQ++DSDDQ RLVKR
Sbjct: 68  AAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQRLVKR 127

Query: 121 VVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS 180
           V++ L LDE ++P +Q  WWIN QKDEG RP++IQP   D +   + ++Y AY+E C R+
Sbjct: 128 VIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPG-GDLFLATQLKIYEAYEEACARA 186

Query: 181 GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGHVF 240
           G++DF+ELLLRA +L RD P LL HY+ RFR +LVDEFQDTNA+QYA++R+LA     + 
Sbjct: 187 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGESLM 246

Query: 241 VVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRI 300
           VVGDDDQ+IYGWRGA++EN+ +F +DFP A+T+RLEQNYRS+A IL AANA+IA+N  R+
Sbjct: 247 VVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQGRL 306

Query: 301 GKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQSRALE 360
           GK+LWT   +G+PI LYAA+NE DEARYVVE   + +RDG S  E+A+LYRSNAQSR LE
Sbjct: 307 GKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSRVLE 366

Query: 361 EALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLD 420
           EAL+ E++PYR+YGG RFFERAEIK+A+AYLR++  R +DAA ER +N P RGIG++T++
Sbjct: 367 EALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEKTVE 426

Query: 421 EVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHV 480
            +R+LAR   LS+W A         ++ RA +AL  F+ LV  L  +   M L      V
Sbjct: 427 CLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLHNMAQLV 486

Query: 481 LMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASL 540
           + +SGL  +   E   G  +++R ENL+ELVS A  F    +ED    + L AFL +ASL
Sbjct: 487 IEQSGLLAYHRDEK--GEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLDHASL 544

Query: 541 EAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEERRLAY 600
           EAGE QA   E+ VQLMTLHSAKGLEFP+VFLVG+E+GLFP   SLEESGRLEEERRLAY
Sbjct: 545 EAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLAY 604

Query: 601 VGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 660
           VGITRA Q+LV+ YAE+RR++G + YN  SRF+REIP  L+ EVR    V+R+ +  +  
Sbjct: 605 VGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNGKSMS 664

Query: 661 GGPVH--AVVDAAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVMAYA 718
           G  +   A V   P  LG  V H  FG G ++++EG+GA ARVQV F++ G+KWL+++YA
Sbjct: 665 GSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLMLSYA 724

Query: 719 NL 720
            L
Sbjct: 725 KL 726