Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  449 bits (1154), Expect = e-130
 Identities = 278/689 (40%), Positives = 389/689 (56%), Gaps = 73/689 (10%)

Query: 5   LNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGE 64
           LNP QREAV A  G  LVLAGAG+GKTRVL  RIA +          I AVTFTNKAA E
Sbjct: 47  LNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAARE 106

Query: 65  MRHRTDLQLRNGSRGM-WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQ 123
           M+ R  + + +   GM W+GTFH +  +LLR H +   L   F ++D+DD +RL+K+++Q
Sbjct: 107 MKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQ 166

Query: 124 SLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVR-RQVYAAYQERCDRSGL 182
           +  LD+ ++P KQ    I+  K++G  P  I       +   + R++YAAYQ R      
Sbjct: 167 AEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLTLNA 226

Query: 183 LDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLA--------- 233
            DF +LLL    + R  P +L  Y A+FR ILVDE+QDTN  QY ++R+LA         
Sbjct: 227 CDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQASRNR 286

Query: 234 -------------GESG-------------------------HVFVVGDDDQAIYGWRGA 255
                        GE G                         ++  VGDDDQ+IYGWRGA
Sbjct: 287 PSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGWRGA 346

Query: 256 KVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRIGKQLWTD--SGDGDP 313
           +V+N+ RF KDFPGA+ ++LE+NYRS+ +ILGAA  +IAHN  R+GK L+T+  + D + 
Sbjct: 347 EVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEK 406

Query: 314 IDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQSRALEEALIAEQLPYRVY 373
           + ++AA++  +EAR + E   Q  R   +  ++++L R++ Q R  E+  +   L YRV 
Sbjct: 407 VHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLNYRVI 466

Query: 374 GGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSL 433
           GG RF+ER EI+DA+AY R++   +DD AFER VNTP RG+G+ T+  +   ARA  + +
Sbjct: 467 GGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARARDIPM 526

Query: 434 WEAAMLCTQENTLAARARNALATFLSLVGQLQA---ETGEMDLAERIDHVLMRSGLREHW 490
             AA    + + L  +AR  L   ++   + Q     T   +LAERI   L  SG    W
Sbjct: 527 LAAASDIVETDELKPKARKGLFDVVADFRRWQTLLETTPHTELAERI---LDESGYTAMW 583

Query: 491 AKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAG 550
             +     ++  R ENL EL+     F     E  +G  E VA +        + +    
Sbjct: 584 QADK--SAEAPGRLENLKELIRSMEAF-----ESMRGFLEHVALVM-------DAEQNEN 629

Query: 551 EEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGR--LEEERRLAYVGITRARQ 608
            + V +MTLHSAKGLEF  VFL G E+GLFP  R+L+E GR  LEEERRLAYVGITRA++
Sbjct: 630 MDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKR 689

Query: 609 KLVLCYAESRRIHGQDNYNVPSRFLREIP 637
           +  + +  +RRIHG     +PSRFL E+P
Sbjct: 690 RCHIWFVSNRRIHGLWQSTLPSRFLDELP 718