Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 807 a.a., UvrD/REP helicase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  472 bits (1214), Expect = e-137
 Identities = 296/779 (37%), Positives = 422/779 (54%), Gaps = 85/779 (10%)

Query: 2   LDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKA 61
           LD LNPAQR+AV +  G  L+LAGAG+GKT+ L  RIA L        + I AVTFTNKA
Sbjct: 39  LDTLNPAQRQAVESLDGPVLMLAGAGTGKTKALTCRIAHLLLTGTARPNEILAVTFTNKA 98

Query: 62  AGEMRHRTDLQLRNGSRGM-WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR 120
           A EM+ R    +     GM W+GTFH +  +LLR H +   L   F ++D+DDQ+RL+K+
Sbjct: 99  AREMKERVATLMNQPVEGMPWLGTFHAIGVKLLRRHAELVGLKSNFTILDTDDQVRLLKQ 158

Query: 121 VVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS 180
           ++ +  +DE ++P +Q+   I+  K+    P  +       +     ++YAAYQER    
Sbjct: 159 IIVAENIDEKRWPARQLAHIIDGWKNRAWAPDAVPAAEASAFNSRGVELYAAYQERLKTL 218

Query: 181 GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGHVF 240
              DF +LLL    + +    +LA Y+  FR ILVDE+QDTN  QY ++R+LAG   ++ 
Sbjct: 219 NATDFGDLLLHVVGIFQKHEDVLAQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNIC 278

Query: 241 VVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRI 300
            VGDDDQ+IYGWRGA+V N+ RF KDFPGA  +RLEQNYRS+ +IL AA+ VI+ N  R+
Sbjct: 279 CVGDDDQSIYGWRGAEVGNILRFEKDFPGALVIRLEQNYRSTPHILAAASGVISGNKGRL 338

Query: 301 GKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYG-------EVAVLYRSN 353
           GK+LWTD+ +G+ + L   ++  +EAR++ E         G+ G       E+A+L R++
Sbjct: 339 GKELWTDAQEGEKVRLIGHWDGDEEARWIGEEIES--MQNGTRGMRPFALNEIAILVRAS 396

Query: 354 AQSRALEEALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRG 413
            Q RA E+  +   LPY+V GG RF+ER EI+DA+AY R++T+  DD AFER VNTP RG
Sbjct: 397 HQMRAFEDRFLTIGLPYKVIGGPRFYERMEIRDAMAYFRVVTSPEDDLAFERIVNTPKRG 456

Query: 414 IGDRTLDEVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGE-MD 472
           +GD+   +++  ARAN + L E A +      L  +    L   +  + +  A   +  +
Sbjct: 457 LGDKAQAKIQAAARANGVPLKEGARILLAAKGLGGKGAAELRLLIDGLDRWSAAARDGAN 516

Query: 473 LAERIDHVLMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELV 532
             E    +L  SG   HW  +     ++  R ENL ELV              +G   L 
Sbjct: 517 HVELAQVILDESGYTTHWQNDKTP--EAPGRLENLKELVKAL-----------EGFENLQ 563

Query: 533 AFLAYASLEAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSL-EESGR 591
            FL + SL     +  AG + V +MTLH+AKGLEFP VFL G EDG+FPS RS+ +++G+
Sbjct: 564 GFLEHVSLVMDNDKGDAGPQ-VSIMTLHAAKGLEFPAVFLPGWEDGIFPSQRSIDDQTGK 622

Query: 592 LE------EERRLAYVGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVR 645
           +E      EERRLAYVGITRA +   + +A +RR+ G+    +PSRF+ E+P   +  + 
Sbjct: 623 VEIGREADEERRLAYVGITRAEELCTISFASNRRVFGRWQDQMPSRFIDELPEAHVEVLT 682

Query: 646 PKVQVSRTASLGAARGGPV----------------------------------------- 664
           P          GAA  G +                                         
Sbjct: 683 PPGLYG--GGYGAAAPGAMPDGVFAGSQLETKAAEANVYNSPGWRRMQARAGARGTSQPR 740

Query: 665 ---HAVVDAAPIK---LGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVMAY 717
              + V+DA  +    LG  V H KFG G V   EG     +++V FD+ G K LV  +
Sbjct: 741 EARNMVIDATAVPAHGLGDRVFHQKFGYGAVTGIEG----DKLEVAFDKAGVKKLVAKF 795