Pairwise Alignments

Query, 927 a.a., DNA polymerase I (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

Subject, 914 a.a., DNA polymerase I from Pseudomonas stutzeri RCH2

 Score =  939 bits (2426), Expect = 0.0
 Identities = 519/941 (55%), Positives = 649/941 (68%), Gaps = 49/941 (5%)

Query: 4   LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERP-AYVAFVVDAPGKT 62
           L+L+DGSSYLYRAFHALPPLT + G+PTGA+ GV+NML +  ++ P +  A V DA G T
Sbjct: 6   LILVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRRQYPDSPFAVVFDAKGPT 65

Query: 63  FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
           FRD L+ +YK++RP MPDDLR+QV+P+   V ALG+ +L ++GVEADDVIGTLA Q A+ 
Sbjct: 66  FRDALFENYKSHRPPMPDDLRSQVEPLHASVRALGMPLLCVEGVEADDVIGTLARQCAAL 125

Query: 123 GLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALMGDTV 182
           G  V ISTGDKD AQLV P V LVNTM+GS  D  E V  KFGV P  I+D LALMGD V
Sbjct: 126 GRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDI-EGVKTKFGVGPELIIDFLALMGDKV 184

Query: 183 DNVPGVEKCGPKTAAKWL--------AEYDSLDGV----IANADKIKGKIGENLRAALPR 230
           DN+PGV   G KTA   L          YD+LD V    I  A  +  K+ E+  AA   
Sbjct: 185 DNIPGVPGVGEKTACGLLNGIPGGLKGLYDNLDQVAGLPIRGAKSLGAKLAEHRDAAF-- 242

Query: 231 LPLNRELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLT 290
             ++ EL TIK DV L      L   EP+ EAL  LY    F   L +L   A  AG   
Sbjct: 243 --MSYELATIKIDVPLDVEVGDLMPGEPHREALIALYRELEFKNWLDDLLREAKAAG--- 297

Query: 291 APMAVARTEPGRARGTGFVSAPAAAPVELDP---ALSAPGQYETILTQAQLDSWIARLRA 347
                                      E+ P   ++ A  QYET+L QA  + W+ RL+ 
Sbjct: 298 ------------------------ENCEVQPEGCSIQAEAQYETLLEQADFERWLDRLKT 333

Query: 348 AGQFAFDTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQLAPL 407
           A  FAFDTET S+DA +A L+G+S A EPGQAAY+P  H + G P QL+    LA L PL
Sbjct: 334 AECFAFDTETTSIDAQRAELVGVSFAIEPGQAAYVPLRHSYMGVPQQLELDAVLAALKPL 393

Query: 408 LTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGY 467
           L DPA  K+ QHGKYD++V+  +GI + G   DT+LES+VL++ + RHDMDSLA +YLG 
Sbjct: 394 LEDPAKTKICQHGKYDMNVLMHYGIEMRGMTFDTMLESYVLDATATRHDMDSLALKYLGR 453

Query: 468 DTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLAAEPALESVYRD 527
            T+++EDI GKGAKQ+ F Q+++E A  YAAEDAD+TLRLHQ L  +L   P+L  V  +
Sbjct: 454 GTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTE 513

Query: 528 IEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQA 587
           IEMPLV VL RIE NG  VDA  L +QS +L  +++  +++A E+AG  FNL SPKQL A
Sbjct: 514 IEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFEIAGEEFNLGSPKQLCA 573

Query: 588 LLFDELKLPAVVKTPKGQPSTNEEALEAIADQ-HELPRVILDYRSLAKLRSTYTDKLPEM 646
           +L+D+L  P + KT  GQPST E  L  +A+Q + LP+VI+ +RSL+KL+ TYTDKLP+ 
Sbjct: 574 ILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQ 633

Query: 647 IHPQSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYS 706
           I+P++GR+HTSYHQA  ATGRLSSSDPNLQNIPIRT +GRRIR+AFVA  G KL+A DYS
Sbjct: 634 INPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYS 693

Query: 707 QIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYG 766
           QIELRIMAHL+ D GL+ AF++  DVHRATAAEVFG  ++ VS D+RR+AKAINFGL+YG
Sbjct: 694 QIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYG 753

Query: 767 MSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDF 826
           MSAFGLA+Q+ +GR EAQ+YI  YF+RYPGV  +ME TR QA ++GYVET+FGRRLYL  
Sbjct: 754 MSAFGLAKQIDVGRKEAQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPE 813

Query: 827 INAGSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVFE 886
           IN+ +   R GAER AINAPMQGTAADIIKRAM++VDGW+ D    A +ILQVHDELV E
Sbjct: 814 INSKNGAMRKGAERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLE 873

Query: 887 ADADFVDTLLAEVTARMSAAASLRVPLVVDSGVGDNWDEAH 927
              D V+ +   +   MS AA L VPL+V++GVG+NWDEAH
Sbjct: 874 VREDLVEQVREAICPLMSGAAQLDVPLLVEAGVGNNWDEAH 914