Pairwise Alignments

Query, 406 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Xanthomonas campestris pv. campestris strain 8004

Subject, 432 a.a., Conserved hypothetical protein from Mycobacterium tuberculosis H37Rv

 Score =  138 bits (348), Expect = 3e-37
 Identities = 134/441 (30%), Positives = 196/441 (44%), Gaps = 78/441 (17%)

Query: 34  QLRNIAAVPFVGPWVAVMPDVHLGKGATVGSVIPTR----GAIIPAAVGVDIGCGMAA-V 88
           Q+ N+A +P +      MPDVH G G  +G V  T     G + P  VG DI CG+   V
Sbjct: 2   QVVNVATLPGIVRASYAMPDVHWGYGFPIGGVAATDVDNDGVVSPGGVGFDISCGVRLLV 61

Query: 89  RTTLRAKDLPDNLAQLRSSIERSVPVGNGRGGEHRNLPD-----SIAT------------ 131
              L  ++L   L  +   ++R++P G G  G  R LPD      + T            
Sbjct: 62  GEGLDREELQPRLPAVMDRLDRAIPRGVGTAGVWR-LPDRNTLQEVLTGGARFAVEQGHG 120

Query: 132 ------RIAQSGLVQRLEAIKQTHRRIRTDKLECQIGTLGGGNHFIEI-CLDET------ 178
                 R    G++   +A K + R ++      QIG+LG GNHF+E+  +D        
Sbjct: 121 VALDLERCEDGGVMTGADAAKISDRALQRGL--GQIGSLGSGNHFLEVQAVDRVYDPVAA 178

Query: 179 -------DAVWVMLHSGSRGTGNLIGTYFIERAREQLANRVLGFHLPDKDLAFFMQGEPL 231
                    V VM+H+GSRG G+ I T  + R  EQ   R  G  +PD+ LA      P 
Sbjct: 179 APMGLAEGTVCVMIHTGSRGLGHQICTDHV-RQMEQAMGRY-GIAVPDRQLACVPVHSPD 236

Query: 232 FDEYVEAVSWAQDYARENREAMMA---RVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHG 288
              Y+ A++ A +Y R NR+ +     RV A+         L+ L  +  HN  + ETH 
Sbjct: 237 GQAYLAAMAAAANYGRANRQLLTEATRRVFADATGT----PLD-LLYDVSHNLAKIETHP 291

Query: 289 GEELL----ITRKGAVS-------------ARTGELGIIPGSMGTRSYIVRGLGNAESFH 331
            +  L    + RKGA               A  G+  +IPG+MGT SY++ G+    +F 
Sbjct: 292 IDGQLRSVCVHRKGATRSLPPHHHELPAELAAVGQPVLIPGTMGTASYVLAGVTGNPAFF 351

Query: 332 SCSHGAGRVMSRTAARQQITLAQHREATAH----VECRKDAAVIDESPAAYKSIDAVMAA 387
           S +HGAGRV+SR  A +  +    R + A     V       + +E P AYK +D V+ A
Sbjct: 352 STAHGAGRVLSRHQAARHTSGEAIRASLAKRGIIVRGTSRRGIAEEKPEAYKDVDEVIEA 411

Query: 388 --QQDLVEVLHTLRQVVCIKG 406
             Q  L   +  L  + C+KG
Sbjct: 412 SHQSGLARKVARLVPLGCVKG 432