Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 582 a.a., DEAD/DEAH box helicase from Rhodanobacter denitrificans FW104-10B01

 Score =  573 bits (1478), Expect = e-168
 Identities = 334/584 (57%), Positives = 398/584 (68%), Gaps = 50/584 (8%)

Query: 17  MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT 76
           MS   LTD  F++FDLHP L  GL+ +GFTRCTPIQ +TLP+AL G DVAGQAQTGTGKT
Sbjct: 1   MSQTVLTDTFFANFDLHPLLQQGLDDSGFTRCTPIQEMTLPLALAGRDVAGQAQTGTGKT 60

Query: 77  LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG 136
            AFLVA+MN LL  PA+A+RK  DPRAL++APTRELAIQI KDA   G   GLR AL+YG
Sbjct: 61  CAFLVALMNHLLTTPAVAERKDSDPRALVIAPTRELAIQIEKDAKAIGRHTGLRSALIYG 120

Query: 137 GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 196
           GVDYDKQR+ L+ G D+IIATPGRL+DY KQ  V SL++ E+ V+DEADRMFDLGFIKD+
Sbjct: 121 GVDYDKQRQQLKDGCDIIIATPGRLLDYHKQG-VFSLNSVEVMVIDEADRMFDLGFIKDV 179

Query: 197 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS 256
           RF+ R++P R  RQ LLFSATLSHRVLELAYEHM+E EKLVVE++ +TA +VRQ +YFP+
Sbjct: 180 RFIFRKLPPREQRQVLLFSATLSHRVLELAYEHMHEAEKLVVESDHVTADKVRQVVYFPA 239

Query: 257 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 316
            EEK  LLL L+ R + +R+++FVNTKA  ERV   ++RHG RVG +SGDVPQ KR+ LL
Sbjct: 240 KEEKMPLLLNLIDRHKPSRSIIFVNTKAAAERVTERVKRHGCRVGAISGDVPQLKRQKLL 299

Query: 317 NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 376
            RFQ GQL+ILVATDVAARGLHI  V +V+NYDLP +AEDYVHRIGRTARLG EGDAISF
Sbjct: 300 QRFQDGQLDILVATDVAARGLHIPAVSHVFNYDLPHEAEDYVHRIGRTARLGAEGDAISF 359

Query: 377 ACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFRE 436
           AC+ YAMSLPDIE YI Q IPV  +  ELL  +P+ P A ++ E   + A DS    F +
Sbjct: 360 ACDLYAMSLPDIETYIGQSIPVGAMEPELLV-MPK-PHA-IDPEFAANAAADSAA--FGD 414

Query: 437 AREQRAADEARRGG--GRSGPGGASRSGSGGGRRDGAGADGKPRPPR-RKPRVEGEADPA 493
               R  ++ RR G  GRSG     RSGS         + G  RPPR RKP +   AD  
Sbjct: 415 VVAPRPGEKPRRSGAPGRSG----ERSGS---------SRGAARPPRERKPEL---ADGR 458

Query: 494 AAPSETPVV-----VAAAAETPAVTAAEGERAPRKRR----RRRNGRPVEGAE-----PV 539
            A +E P         AA    A  AAEG R PR+RR    RRR G P +G E     P 
Sbjct: 459 VAAAEQPAAEGVHKTEAAPRADAGPAAEGTRKPRRRRGGRNRRREGAPTDGVETTGHQPA 518

Query: 540 VASTPVPAPAAPRKPTQV----------VAKPVRAAAKPSGSPS 573
           VA     AP   R+P +            ++P R  A  SG PS
Sbjct: 519 VAEGN-RAPRGERRPPRERNAAESAGSGHSRPSRQVAVTSGKPS 561