Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas fluorescens FW300-N2C3

 Score =  323 bits (827), Expect = 1e-92
 Identities = 178/386 (46%), Positives = 237/386 (61%), Gaps = 2/386 (0%)

Query: 27  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 86
           F  F L P L+  ++  GF  CTPIQA  L   L G D  G+AQTGTGKT AFL++++ +
Sbjct: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 159

Query: 87  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 146
           LL  P   +R   +PRALI+APTREL +QI KDA       GL      GG+D+DKQ + 
Sbjct: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219

Query: 147 LQ-QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 205
           L+ +  D+++ATPGRL+D+  Q   V L   E+ VLDEADRM D+GFI  +R ++R+ P 
Sbjct: 220 LEARHCDILVATPGRLLDF-NQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 278

Query: 206 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLL 265
           +  RQTLLFSAT +  V+ LA +   +P  + +E E + +  V Q IY  +  +K  LL 
Sbjct: 279 KSERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLY 338

Query: 266 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 325
            L++ +   R MVF N K  V R+   L R G     LSGDVPQ KR   L  F++G++ 
Sbjct: 339 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 398

Query: 326 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 385
           +LVATDVA RG+HIDG+ +V N+ LP   +DYVHRIGRT R G  G +ISFA E  +  L
Sbjct: 399 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 458

Query: 386 PDIEAYIEQKIPVEPVTTELLTPLPR 411
           P IEA + +KI  E   T LL P+ R
Sbjct: 459 PSIEALLGRKISCEMPPTHLLRPVER 484