Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  287 bits (735), Expect = 8e-82
 Identities = 197/558 (35%), Positives = 277/558 (49%), Gaps = 39/558 (6%)

Query: 25  LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 84
           ++F+S  L  ALV  +E+AG+T+ TP+Q   +P  L G D+   AQTGTGKT  F + ++
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 85  NRLLIR--PALADRK-PEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYD 141
            RL     P  + R  P  PR L+L PTRELA Q+H+    +  DL    A ++GGV  +
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 142 KQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR 201
            Q + + +GVDV++A PGRL+D   Q  V   H  EI VLDEADRM D+GF+ D++ +L 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHV-EILVLDEADRMLDMGFVHDVKKVLA 179

Query: 202 RMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQ 261
           R+P +  RQ LLFSAT S+ +  LA + ++ PE++ V     T  R+ QR++  +   K+
Sbjct: 180 RLPAK--RQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKR 237

Query: 262 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 321
           +LL  L++     + +VF  TK    R+A  L++HG     + G+  Q  R   L  F+ 
Sbjct: 238 SLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297

Query: 322 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 381
           G + I+VATD+AARGL ID + +V N++LP   EDYVHRIGRT R G  G+AIS      
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 382 AMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAREQR 441
              L  IE   +QKI    +    +T         VE E+ +      V    R +R  R
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDIT--------AVEAEKPEVRERPDV----RNSRGAR 405

Query: 442 AADEARRGGGRSGPGGASRSGSGGGRRDGAGADGKPRPPRRKPRVEGEADPAAAPSETPV 501
            A    RG G    GG    G   G+   A A      P R+PR +        P E   
Sbjct: 406 PA----RGDGDKNNGGRRDKGKDKGKEKPAAASATGERPARQPREK-------KPREGTP 454

Query: 502 VVAAAAETPAVTAAEGERAPRKRR---------RRRNGRPVEGAEPVVASTPVPAPAAPR 552
                A  PA      +RAP + R         R     P +G        P  AP A  
Sbjct: 455 RSEQRASQPATPRPAADRAPDEFRDDEVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAA 514

Query: 553 KPTQVVAKPVRAAAKPSG 570
                 A+P     +P+G
Sbjct: 515 PAAGGAARPAN-PGRPAG 531