Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas sp. BP01

 Score =  291 bits (744), Expect = 7e-83
 Identities = 186/502 (37%), Positives = 257/502 (51%), Gaps = 46/502 (9%)

Query: 25  LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 84
           ++F+S  L  ALV  +E+AG+T+ TP+Q   +P  L G D+   AQTGTGKT  F + ++
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 85  NRLLI--RPALADRK-PEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYD 141
            RL     P  + R  P  PR L+L PTRELA Q+H     +  DL L  A ++GGV  +
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 142 KQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR 201
            Q + + +GVDV++A PGRL+D   Q KV   H  EI VLDEADRM D+GFI D++ +L 
Sbjct: 121 PQVQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV-EILVLDEADRMLDMGFIHDVKKVLA 179

Query: 202 RMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQ 261
           R+P +  RQ LLFSAT S  + +LA + ++ PE++ V     T  R+ QR+Y      K+
Sbjct: 180 RLPSK--RQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKR 237

Query: 262 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 321
            LL  L++     + +VF  TK    R+A  LE+ G     + G+  Q  R   L  F+ 
Sbjct: 238 ALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 322 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 381
             + +LVATD+AARGL ID + +V N++LP   EDYVHRIGRT R G  G+AIS      
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 382 AMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAREQR 441
              L  IE    QKI                     +G+ +  DA      +  E  E R
Sbjct: 358 EKLLKSIERVTRQKI--------------------ADGDLMGFDASQ----VEAEKPEVR 393

Query: 442 AADEARRGGGRSGPGGASRSGSGGGRRDGAGADGK----------------PRPPRRKPR 485
              +A   GGR+ P G     + GGR+D     GK                 +P +RKPR
Sbjct: 394 ERPQANGRGGRNQPRGEGGKDANGGRKDKGKDKGKAKQPAAAKPADKEKSGDKPQQRKPR 453

Query: 486 VEGEADPAAAPSETPVVVAAAA 507
                   A+ + TP   A  A
Sbjct: 454 DNKPRQQQASQNSTPKAPADRA 475