Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 439 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  416 bits (1068), Expect = e-120
 Identities = 232/453 (51%), Positives = 289/453 (63%), Gaps = 20/453 (4%)

Query: 17  MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT 76
           MS   L++  F+   LHP +   L   GF  CTPIQAL+LPV L   D+AGQAQTGTGKT
Sbjct: 1   MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT 60

Query: 77  LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG 136
           +AFLVA  N LL       R+   PRA+I+APTRELAIQI KDA+       L+  +VYG
Sbjct: 61  MAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG 120

Query: 137 GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 196
           G  YD QR++L QGVD++I T GR+IDYV+Q  +++L+A +  VLDEADRMFDLGFIKDI
Sbjct: 121 GESYDVQRKVLDQGVDILIGTTGRIIDYVRQG-IINLNAIQAVVLDEADRMFDLGFIKDI 179

Query: 197 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS 256
           RFL RRMP    R  +LFSATLS +V ELAY+HMN+P K+ +  E  T+  +++ I++PS
Sbjct: 180 RFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPS 239

Query: 257 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 316
            E+K  LLL L+      + +VF NTK   E +   LE  G+RVG+L+GDVPQKKR  +L
Sbjct: 240 QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRIL 299

Query: 317 NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 376
            +F +GQL+ILVATDVAARGLHI  V +VYNYDLP D EDYVHRIGRT R G +G ++SF
Sbjct: 300 EQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359

Query: 377 ACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFRE 436
           ACE YA++LP IE YI   IPV     + L                 DD    V    + 
Sbjct: 360 ACEEYALNLPAIETYINHSIPVSNYDRDALL----------------DDIPSPVKIHRKH 403

Query: 437 AREQRAADEARRGGGRSGPGGASRSGSGGGRRD 469
               R   E R G GR+   GA RSG    R D
Sbjct: 404 PAGARNLRE-RSGAGRT--PGAHRSGGRPPRHD 433