Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 576 a.a., ATP-dependent RNA helicase RhlB from Lysobacter sp. OAE881

 Score =  834 bits (2154), Expect = 0.0
 Identities = 444/580 (76%), Positives = 485/580 (83%), Gaps = 16/580 (2%)

Query: 17  MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT 76
           MSDKPLTD++FSSFDLHP+L+AGLE+AGFTRCTPIQALTLP+AL G DVAGQAQTGTGKT
Sbjct: 1   MSDKPLTDVSFSSFDLHPSLLAGLEAAGFTRCTPIQALTLPIALQGRDVAGQAQTGTGKT 60

Query: 77  LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG 136
           LAFLVAVMNRLL RPALA+RKPEDPRALILAPTRELAIQIHKDAVKFG+DLGL+FALVYG
Sbjct: 61  LAFLVAVMNRLLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLKFALVYG 120

Query: 137 GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 196
           GVDYDKQRELLQ+G D+IIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
Sbjct: 121 GVDYDKQRELLQKGADIIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 180

Query: 197 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS 256
           RFLLRRMP R  RQTLLFSATLSHRVLELAYEHMNEPEKLVVE ET+TAARVRQ+++FP+
Sbjct: 181 RFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVEAETVTAARVRQKVFFPA 240

Query: 257 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 316
           D+EK  LLLGLLSRSEGARTMVFVNTKAFVERVAR LE+ GYRVGVLSGDVPQKKRE+LL
Sbjct: 241 DDEKIPLLLGLLSRSEGARTMVFVNTKAFVERVARALEKGGYRVGVLSGDVPQKKRETLL 300

Query: 317 NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 376
           NRFQKGQLEILVATDVAARGLHIDGV +VYNYDLPFDAEDYVHRIGRTARLG EGDAISF
Sbjct: 301 NRFQKGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF 360

Query: 377 ACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFRE 436
           ACERYAMSLPDIEAYIEQK+PV  V  ++L  +PR PR   EG E + +  +S+G+IF+E
Sbjct: 361 ACERYAMSLPDIEAYIEQKLPVAAVEADMLVAIPRPPREVPEGAEGEGE-NESIGSIFKE 419

Query: 437 AREQRAADEARRGGGRS---GPGGASRSG-SGGGRRDGAGADGKPRPPR--RKPRVEGEA 490
           AREQRAADE RRGGGRS    PGG    G   GGRR+G  A+G+   PR  RKPR +   
Sbjct: 420 AREQRAADEERRGGGRSRGGKPGGGRSEGRREGGRREGGRAEGREGAPRGERKPRPQPVV 479

Query: 491 DPAAAPSETPVVVAAAAETPAVTAAEGERAPRKRRRRRNGRPVEGAEPVVASTPVPAPAA 550
           D AA   +     A  A TP     + ERAPRKRRRRR GR +EGAE        PA AA
Sbjct: 480 DAAAQAHQ-----AVEAATP--PTGDAERAPRKRRRRRGGRRIEGAE-AATQAAAPAQAA 531

Query: 551 PRKPTQVVA-KPVRAAAKPSGSPSLLSRIGRRLRSLVSGS 589
           P+ PTQV A K  +AAAK      LL RIGR L+SL+S S
Sbjct: 532 PKSPTQVHAQKAAKAAAKDGDKLGLLHRIGRGLKSLISRS 571