Pairwise Alignments

Query, 458 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM from Xanthomonas campestris pv. campestris strain 8004

Subject, 453 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  281 bits (719), Expect = 3e-80
 Identities = 162/429 (37%), Positives = 238/429 (55%), Gaps = 8/429 (1%)

Query: 24  LALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTSLLWLPMLVPI-GTLISLTASV 82
           LALP+++  V+  ++GF+D ++AG      +AAV +GTSL WLP L+ + G L++ T   
Sbjct: 14  LALPVLIAQVTQTMMGFIDTLMAGRVSAVDMAAVAVGTSL-WLPALLFVQGLLMAFTPVF 72

Query: 83  SQLVGAGREREIGPLFRQALWLSL-GLGALMFGFLTAVPPLLPTFGIAPDIVPGATDFLH 141
           SQL GA  E  I PL  QA ++++ G  A+M  FL     +L    +  D+   +  +L 
Sbjct: 73  SQLHGADDEASIRPLAYQAAYIAIIGAFAVML-FLGLSSEILTRMDLETDLRQLSEGYLF 131

Query: 142 AVRWGGPALTFYFCMRYLSEGMHWTLPTMLLGFGGLLVLAPLGYVLTYGKFGFAEHGAQG 201
              WG PA   Y  +R +SEG+ +TLPTM++GF GL V  P  Y+  YG FG    G  G
Sbjct: 132 GFLWGVPAFVMYQVLRGMSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGMPAMGGAG 191

Query: 202 LGMASAITMWVQAIAFALYLWRSRRFAHLELFTHLEGPRWRAIGELLRTGLPIGITVLME 261
            G+A+A+  W   IA  +Y+   ++FA +  F   E P+   +  + + G PI + +  E
Sbjct: 192 CGVATALVFWAMLIAMLIYMAFHKKFALVSPFKAFEQPKISTMWRMTKLGFPIAMALFFE 251

Query: 262 GGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIPMGVAEATTVRVGHAVGRGDPLGMR 321
             LF + ALL+  LG+   A HQIA+N S + FM+P+ +  A ++R+G+ +GR       
Sbjct: 252 VSLFAIIALLLAPLGANVVAGHQIALNFSSIVFMLPLSIGLAVSIRIGYYLGREKADVAA 311

Query: 322 RAAWAGYAIVLGTQAVSASILLLGHDAIVGVYTNDAAVAALASVLLLFAATFQFPDGIQV 381
             A  G  + L   +++A I ++    I  +Y  D  V ALAS L+L AA +Q  D +QV
Sbjct: 312 LVAKVGLGLALFLASITAVITVVFRVEIARLYNTDPNVVALASSLMLMAALYQLSDSVQV 371

Query: 382 LSAGALRGLKDTRVPMFLAMFSYWGLGMPLGAGLG----LGLGWGPQGMWIGLILGLTAA 437
           ++AGALRG KDTR   ++ + SYW +GM LG  L     L    G  G W GLI GLT A
Sbjct: 372 VAAGALRGYKDTRSAFYITLISYWAIGMTLGYTLAYTDWLVPAMGAHGFWTGLIAGLTTA 431

Query: 438 AILMGLRFR 446
           A L  +R R
Sbjct: 432 AALFAIRLR 440



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 19/189 (10%)

Query: 246 ELLRTGLPIGITVLMEGGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIPMGVAEATT 305
           +L++  LP+ I  + +  +  +  L+ GR+ + + AA  +  ++     +   G+  A T
Sbjct: 10  KLIQLALPVLIAQVTQTMMGFIDTLMAGRVSAVDMAAVAVGTSLWLPALLFVQGLLMAFT 69

Query: 306 VRVGHAVGRGDPLGMRRAAW-AGYAIVLGTQAVSASILLLGHDAIVGVYTNDAAVAALAS 364
                  G  D   +R  A+ A Y  ++G  AV   +L LG  + +    +        S
Sbjct: 70  PVFSQLHGADDEASIRPLAYQAAYIAIIGAFAV---MLFLGLSSEILTRMDLETDLRQLS 126

Query: 365 VLLLFAATFQFPDGI--QVLSAGALRGLKDTRVPMFLA------------MFSYWGLGMP 410
              LF   +  P  +  QVL  G   G+  T   M +             +F Y   GMP
Sbjct: 127 EGYLFGFLWGVPAFVMYQVL-RGMSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGMP 185

Query: 411 LGAGLGLGL 419
              G G G+
Sbjct: 186 AMGGAGCGV 194