Pairwise Alignments

Query, 458 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM from Xanthomonas campestris pv. campestris strain 8004

Subject, 450 a.a., MATE efflux family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  195 bits (495), Expect = 3e-54
 Identities = 145/458 (31%), Positives = 231/458 (50%), Gaps = 19/458 (4%)

Query: 3   VPHSSPSATPRFAAEVRTTGLLALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTS 62
           +P S  S  P   +E+     L++PL++G  +  LIG +D V+    GT  LAA  I TS
Sbjct: 1   MPMSHASPIPTTISELAPLLRLSIPLMIGLAAPMLIGVIDTVMIAPLGTEPLAAAGITTS 60

Query: 63  LLWLPMLVPIGTLISLTA-SVSQLVGAGREREIGPLFRQALWLSLGLGALMFGFLTAVPP 121
           ++ + +L  +  L+++T   ++Q  GAG    +    +  LWLSL  G L    + A+ P
Sbjct: 61  VVII-LLSSLWGLVTMTGIRIAQAEGAGDRPGVAIELKTGLWLSLAAGGLGMALMLAILP 119

Query: 122 LLPTFGIAPD----IVPGATDFLHAVRWGGPALTFYFCMRYLSEGMHWTLPTMLLGFGGL 177
            L   G  PD    I+PG   ++    W  P   FY  ++ L + +      + L + G+
Sbjct: 120 ALGLLG-QPDSVRAILPGY--WVSMAVWLLPFTAFYV-IKGLFDAVDRPWAGVALSYLGV 175

Query: 178 LVLAPLGYVLTYGKFGFAEHGAQGLGMASAITMWVQAIAFALYLWR-SRRFAHLELFTHL 236
           +V  PL ++L Y     A  G  G G+AS ++  + A+  A  +WR ++  A   +    
Sbjct: 176 VVNLPLNWLLIYP----AGLGLLGAGLASILSQTL-ALGAAWLVWRRAKGLAPWRVPVPA 230

Query: 237 EGPRWRAIGELLRTGLPIGITVLMEGGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMI 296
              R RA    +R G P+ +    EGG + +  L++G +G+T  AA+QI   V  + ++ 
Sbjct: 231 GALRLRA---QIRDGWPLVVGYAGEGGAYALIGLMMGWVGATALAANQIVHTVGAVGYVF 287

Query: 297 PMGVAEATTVRVGHAVGRGDPLGMRRAAWAGYAIVLGTQAVSASILLLGHDAIVGVYTND 356
           P+G+A A ++RVG A G G    +R    A   +V G   +  +  L+  D + G+ ++D
Sbjct: 288 PLGMAMAASIRVGLAHGAGQTGRLRAILRAALTVVTGWMILLMAFFLIAGDWLSGLLSDD 347

Query: 357 AAVAALASVLLLFAATFQFPDGIQVLSAGALRGLKDTRVPMFLAMFSYWGLGMPLGAGLG 416
             V ALA+ L +  A  Q  DG+Q  S GALRG+ D R P  +++ +YW L +P    LG
Sbjct: 348 PEVVALAATLFIALACMQIADGVQSTSLGALRGMGDMRWPTAMSLIAYWPLALPAAYALG 407

Query: 417 LGLGWGPQGMWIGLILGLTAAAILMGLRFRQTSRRLTA 454
              G G  G+W+G  LGL  AAI++ LRF   + R  A
Sbjct: 408 FWAGLGALGLWVGFGLGLAIAAIMLPLRFWHLTGRAPA 445