Pairwise Alignments

Query, 458 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM from Xanthomonas campestris pv. campestris strain 8004

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  218 bits (556), Expect = 2e-61
 Identities = 135/429 (31%), Positives = 215/429 (50%), Gaps = 10/429 (2%)

Query: 24  LALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTSLLWLPML-VPIGTLISLTASV 82
           L LPL+  H++   I   D V+ G +    LAAV +G+S ++  +L V  G   ++   V
Sbjct: 17  LGLPLIGSHMAQIAISATDTVMLGWYSAEALAAVVLGSSSIFFALLIVGSGFAWAVMPMV 76

Query: 83  SQLVGAGREREIGPLFRQALWLSLGLGALMFGFLTAVPPLLPTFGIAPDIVPGATDFLHA 142
           ++    G E +I  + R   WL L   A++   +    P L   G  P       ++L  
Sbjct: 77  AKAASEGDEVQIRRVTRMGFWLVLIFAAVVTPPMLWSAPWLVALGQDPGTAQLTQEYLRI 136

Query: 143 VRWG-GPALTFYFCMRYLSEGMHWTLPTMLLGFGGLLVLAPLGYVLTYGKFGFAEHGAQG 201
                GP L       YLS  +  T   + +  G  ++ A L YVL +G+ G  E G +G
Sbjct: 137 AGLALGPGLLVMVLKGYLS-ALERTQVVLWVTIGAAVLNAGLNYVLIFGRLGMPELGIRG 195

Query: 202 LGMASAITMWVQAIAFALYLWRSRRFAHLELFTHLEGPRWRAIGELLRTGLPIGITVLME 261
             +AS     V  +A  +Y    R+    +LF  L  P W A   + R G PI +T   E
Sbjct: 196 AALASLSLHLVSLVALVIYA--RRKLPEHDLFRRLWVPDWSAFRAVYRLGWPISVTSFAE 253

Query: 262 GGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIPMGVAEATTVRVGHAVGRGDPLGMR 321
            G+F  +A+++G +G+   AAH IA+ +  + FM+ +G+++A TVR G A+G GD   ++
Sbjct: 254 SGMFAASAMMMGAIGTLHLAAHGIALQMVAITFMVHVGLSQAATVRAGRALGLGDAAALK 313

Query: 322 RAAWAGYAIVLGTQAVSASILLLGHDAIVGVYTND-----AAVAALASVLLLFAATFQFP 376
           R      A+  G    +  + +   + ++G + +      A +  +   LL  AA FQF 
Sbjct: 314 RGGAVAIALSAGFSLCTVVVFVTMPEVLIGAFLSPDEPARAEILGIGIALLFMAALFQFA 373

Query: 377 DGIQVLSAGALRGLKDTRVPMFLAMFSYWGLGMPLGAGLGLGLGWGPQGMWIGLILGLTA 436
           DG Q+++ G LRG++DTRVPM +A  +YWG+G+P+G  LG        G+W GL++GL  
Sbjct: 374 DGAQIMALGLLRGVQDTRVPMVIAALAYWGVGLPVGFVLGFYTPLAGVGIWAGLVVGLAL 433

Query: 437 AAILMGLRF 445
           AA+L+  RF
Sbjct: 434 AAMLLMWRF 442