Pairwise Alignments

Query, 458 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM from Xanthomonas campestris pv. campestris strain 8004

Subject, 459 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  289 bits (739), Expect = 2e-82
 Identities = 158/428 (36%), Positives = 240/428 (56%), Gaps = 6/428 (1%)

Query: 24  LALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTSLLWLPMLVPI-GTLISLTASV 82
           LALP+++  V+  ++GF+D V+AG      +AAV +GTSL WLP ++ + G L++ T   
Sbjct: 14  LALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSL-WLPAILFVQGLLMAFTPLF 72

Query: 83  SQLVGAGREREIGPLFRQALWLSLGLGALMFGFLTAVPPLLPTFGIAPDIVPGATDFLHA 142
           +   GA  ++ I PL  Q  +L+L  G  +  FL + P +L    + P +      ++  
Sbjct: 73  AHHNGANNQKAIQPLAFQGAYLALIGGLGVMAFLASAPLVLSHMNLEPQLYNLTIGYIDG 132

Query: 143 VRWGGPALTFYFCMRYLSEGMHWTLPTMLLGFGGLLVLAPLGYVLTYGKFGFAEHGAQGL 202
           + WG PA   Y  +R  SEG+ +TLPTM++GF GL V  P  Y+  YG FG    G  G 
Sbjct: 133 ILWGAPAFVLYQVLRGCSEGISYTLPTMIIGFVGLAVNIPANYIFIYGHFGMPAMGGAGC 192

Query: 203 GMASAITMWVQAIAFALYLWRSRRFAHLELFTHLEGPRWRAIGELLRTGLPIGITVLMEG 262
           G+A+A+  W   IA  +Y+   ++FA L  F+    P +  + ++ + G+PI + +  E 
Sbjct: 193 GVATALVFWAMLIAMTIYMQLHKKFAALAPFSQFHRPDFATMKKMTKLGMPIAMALFFEV 252

Query: 263 GLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIPMGVAEATTVRVGHAVGRGDPLGMRR 322
            LF + ALL+  LG+T  A+HQIA+N S + FM+P+ +  A ++R+G+ +GR        
Sbjct: 253 SLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRIGYYLGRDRADISAV 312

Query: 323 AAWAGYAIVLGTQAVSASILLLGHDAIVGVYTNDAAVAALASVLLLFAATFQFPDGIQVL 382
            A  G  + L     +A + +L    I  +Y +D  V  LA  L+L AA +Q  D IQV+
Sbjct: 313 VAKVGLWLALSLALSTAILTVLFRFQIAELYNSDPEVVVLAGSLMLMAALYQLSDSIQVV 372

Query: 383 SAGALRGLKDTRVPMFLAMFSYWGLGMPLGAGLG----LGLGWGPQGMWIGLILGLTAAA 438
           +AGALRG KDTR   ++ +FSYWG+GM LG  L     +    G  G W GLI GLT+AA
Sbjct: 373 AAGALRGYKDTRSAFYITLFSYWGIGMTLGYTLAYTDFIVPAMGAHGFWTGLIAGLTSAA 432

Query: 439 ILMGLRFR 446
           +L  +R R
Sbjct: 433 LLFFIRLR 440



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 247 LLRTGLPIGITVLMEGGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIPMGVAEATTV 306
           L++  LP+ I  + +  +  +  ++ GR+ + + AA  +  ++     +   G+  A T 
Sbjct: 11  LIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGLLMAFTP 70

Query: 307 RVGHAVGRGDPLGMRRAAWAG-YAIVLGTQAVSASI----LLLGH 346
              H  G  +   ++  A+ G Y  ++G   V A +    L+L H
Sbjct: 71  LFAHHNGANNQKAIQPLAFQGAYLALIGGLGVMAFLASAPLVLSH 115