Pairwise Alignments

Query, 378 a.a., Uncharacterized protein with LysM domain, COG1652 from Xanthomonas campestris pv. campestris strain 8004

Subject, 365 a.a., peptidoglycan-binding LysM (RefSeq) from Shewanella loihica PV-4

 Score =  157 bits (398), Expect = 3e-43
 Identities = 117/392 (29%), Positives = 183/392 (46%), Gaps = 60/392 (15%)

Query: 6   RTVVAAAMLTVATYAAAQAV---GEHPDTYVVRKGDTLWDIAGRFLEKPWLWPEIWQANP 62
           R ++   M+  +++  A  +     HPD+YVV+KGDTLWDI+ +FL+ PW WP++W ANP
Sbjct: 7   RLILLGLMIFSSSFVVADTLTLKSGHPDSYVVKKGDTLWDISAQFLKDPWRWPKLWGANP 66

Query: 63  QIQNPHLIYPGDVISLAYLDRVAKGTVQPGPRQE---------APINAIPLADVEPFLKN 113
           QI NPHLIYPGD ++L ++D   +  V+P  R+            I A+ L+ ++P+L  
Sbjct: 67  QIANPHLIYPGDRLTLVFIDGEPRLVVKPHIRKSPEGRVLPKGGAIPAVDLSLIQPYLVQ 126

Query: 114 LRVV--EDFDELPYVVGLEDSRSRATKGQLAYVVGLDEAQPGQRYAVVRPTVKFSLPKHN 171
            RVV  E FDE P V+G E          + Y+ G  E   G ++ V     +F   +  
Sbjct: 127 NRVVDGEWFDEQPMVMGGESESKHHVTDDVIYIQG--ELTLGDKFGVYAKGRQFEDAESG 184

Query: 172 EELDAAGNITQGAGNIWKSYIAPSTRREFLGYELTQVNIGTITRSAAAGNSKAATLLLQD 231
           ++                           LG E+     G +  S      +     L  
Sbjct: 185 DD---------------------------LGLEVILTASGRVIESGPVSKVR-----LLS 212

Query: 232 SGREVRAGDRIIAVEAQP-YDLQFIPHPPSEQAVQTELRVLAIADAFTAGGTRDVIAISG 290
           + RE +AG R++ +E        F+P     +A  T  +VLA        G  DV+ I  
Sbjct: 213 NMRETKAGYRVLPIEDDSLMSAYFMP-----KAATTPGKVLASEKDVREMGKLDVVYIDR 267

Query: 291 GAREGIDNGTVFSIWRKGRTV-----SDRVKHSRFSRADDGFSGPSS-STVGLPDEYAAH 344
           G+++G++ G VFSI+R G  V        V+    S  ++  +  SS +   +PD Y   
Sbjct: 268 GSQDGVETGHVFSIFRDGAEVVIDGDGKPVQPKDRSTYEELLASISSDNATKMPDIYRGK 327

Query: 345 AMVFRTYDRVSYALVMESVKPTGLGYFVKHPD 376
            MVF+ +DRVS  L++ + KP  +   +  PD
Sbjct: 328 LMVFKVFDRVSLGLILINEKPVRVHDKLLQPD 359