Pairwise Alignments

Query, 290 a.a., O-antigen export system permease protein RfbD from Xanthomonas campestris pv. campestris strain 8004

Subject, 277 a.a., ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  115 bits (289), Expect = 8e-31
 Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 7/214 (3%)

Query: 42  LSSIRNDLRLRFLRSKLGALWMIIHPLMQVLIFATILSEVLAAKLPGV----NNKFAYAL 97
           L+ +R +L  ++  S LG  W +++ L Q+LI+  I S +L  + P +    ++   Y L
Sbjct: 27  LTLVRRELEAQYQGSVLGNAWPLLNQLSQLLIYTYIFSMILKTR-PALASLGDSTMGYGL 85

Query: 98  YLMAGTLCWSMFAESIGKCASLFVDNGNLMKKQAFPRICLPLIAGGTVMVNNLLLFLAII 157
           +L +G L W  F     + A+  +   NL+KK  FP   LPL+  G  +V +    L ++
Sbjct: 86  WLFSGLLPWIAFTNGFSRAATAVIRQPNLVKKVVFPLGLLPLVDPGVALVESAFGTLVLL 145

Query: 158 VVFAILGHSLGPQAGWLPLLMLLTLAFAMSIGLLLGIFNVFVRDIGQVVPVVLQAMFWVT 217
              AI G +L   A WLPLL L        +  LL    V++RDI Q+V V L   F++T
Sbjct: 146 AATAIAGVNL-QGALWLPLLWLPQFLLTAGLAYLLAGLTVYLRDIPQIVGVSLNLWFYLT 204

Query: 218 PIVYTIDILPQQTRD-LFKLNPLFPLVSAYQGVL 250
           PIVY + ++P+  R  L  LNP+  LV  Y+  L
Sbjct: 205 PIVYPLTLIPEPLRGWLLTLNPMAQLVELYRSTL 238