Pairwise Alignments

Query, 290 a.a., O-antigen export system permease protein RfbD from Xanthomonas campestris pv. campestris strain 8004

Subject, 284 a.a., ABC transporter permease from Pedobacter sp. GW460-11-11-14-LB5

 Score =  102 bits (254), Expect = 1e-26
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 28/276 (10%)

Query: 31  IRSVWAFRYFILSSIRNDLRLRFLRSKLGALWMIIHPLMQVLIFATILSEVLAAKLPGVN 90
           +  VWA+R  ++  +R D    + ++ LG LW  I PL   +IF  I        L G++
Sbjct: 21  LHEVWAYRDLLVLLVRRDFVSFYKQTILGPLWFFIQPLFTTIIFTFIFGN-----LAGIS 75

Query: 91  -NKFAYALYLMAGTLCWSMFAESIGKCASLFVDNGNLMKKQAFPRICLPLIAGGTVMVNN 149
            +     L+ MAG   W+ FA+ + K +S+F DN  +  K  FPR+ +PL    +++V+N
Sbjct: 76  TDSLPKPLFYMAGITAWNYFADCLTKTSSVFRDNAGIFGKVYFPRLIMPL----SIVVSN 131

Query: 150 L-------LLFLAIIVVFAILGHSLGPQAGW----LPLLMLLTLAFAMSIGLLLGIFNVF 198
           L       LLFL ++  +   G +      W     P++++L     +  G+++      
Sbjct: 132 LVRFGVQMLLFLILMAYYYFSGANF--NISWAICLFPVIVILMALLGLGAGMIISAMTTK 189

Query: 199 VRDIGQVVPVVLQAMFWVTPIVY----TIDILPQQTRDLFKLNPLFPLVSAYQGVLLYGR 254
            RD+  ++   +Q + + T ++Y     I+  P     + + NP+ P++  ++   L   
Sbjct: 190 YRDLAFLIGFGVQLLMYATTVIYPLSEAINKYPAYAW-IIEYNPMTPIIETFRYGFLGQG 248

Query: 255 APDWMSLLPLTAATAILGFVSLVVFRRASAEMVDAL 290
           +  W SL   T  T  L  +  VVF +     VD +
Sbjct: 249 SFSWFSLGYATIVTIFLLLIGTVVFNKVERNFVDTV 284