Pairwise Alignments

Query, 323 a.a., Tyrosine recombinase XerD from Xanthomonas campestris pv. campestris strain 8004

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  200 bits (508), Expect = 4e-56
 Identities = 124/302 (41%), Positives = 165/302 (54%), Gaps = 15/302 (4%)

Query: 27  IQRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLQGADRSALFDYLRWRTEARY 86
           ++ FL+ + AE+G A  TL SY RDLE    +    G GL  A    L  YL       +
Sbjct: 9   VEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAGQGF 68

Query: 87  APRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQIDALLAAPEI 146
              S AR LS LR FY     +G+R+DDPT +LD P+  R+LPK L+   +  L+   E 
Sbjct: 69  KASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQAEA 128

Query: 147 GTPLG-------LRDRAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVP 199
               G       LR  A++EL+YA G+RVSELV+LPA  +      L + GKG+KERLVP
Sbjct: 129 EAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKERLVP 188

Query: 200 LGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYAAVA 259
           L + +   +  Y E  +   ++   +   +G+           L RQ F   +K  AA A
Sbjct: 189 LSQAAIRAMRAYGEALQEESADSPWLFPSNGK--------SGHLPRQVFARDLKSLAARA 240

Query: 260 GIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARH 319
           GI    +SPH LRH+FA+HLL +GADLRA+Q LLGHS +STTQIYT V  + L  L   H
Sbjct: 241 GIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNH 300

Query: 320 HP 321
           HP
Sbjct: 301 HP 302