Pairwise Alignments

Query, 323 a.a., Tyrosine recombinase XerD from Xanthomonas campestris pv. campestris strain 8004

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  217 bits (553), Expect = 3e-61
 Identities = 137/296 (46%), Positives = 171/296 (57%), Gaps = 3/296 (1%)

Query: 28  QRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLQGADRSALFDYLRWRTEARYA 87
           + FL+ + AE+G AR+T+++Y RDL   A +    G       R  L  YL     A  A
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82

Query: 88  PRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQIDALLAAPEIG 147
           PRS AR LS LR F+   + +G R DDPT  LD PRL R LP+ L+E+++DALL A E G
Sbjct: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAG 142

Query: 148 T-PLGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVPLGEESQH 206
               GLR R +LEL+Y+ GLRVSELV+LP    N     + V GKG KERLVPLG  ++ 
Sbjct: 143 EGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARA 202

Query: 207 WLERYLETARPTLSERKAVPAVDGQVPLF-IDAARRPLSRQQFWGLVKRYAAVAGIDPDT 265
            L  +L  ARPT               LF   AA   L+R  F  ++   A  AGIDP  
Sbjct: 203 ALRDWL-IARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPAR 261

Query: 266 VSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHP 321
           VSPH LRH FA+H+L HGADLR +Q LLGH+ ++TTQIYT V    L TL    HP
Sbjct: 262 VSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHP 317