Pairwise Alignments

Query, 1082 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1173 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score =  345 bits (885), Expect = 1e-98
 Identities = 305/1096 (27%), Positives = 489/1096 (44%), Gaps = 132/1096 (12%)

Query: 47   AYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQL 106
            ++  L   +++S + G    + L       G  A+A+TD  ++  +V+  + ++ +G++ 
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSGIKP 63

Query: 107  IVGSEFTLV----DG--TRFVLLVENAHGYPQLCSVITTGR----------------RAA 144
            I G++  +     DG  +R  LL  N  GY  L  +I+ G                 + A
Sbjct: 64   ICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWVKLA 123

Query: 145  GKGAYRLGRAEVEAHFRDVVPGVFALWLPGDQPQAEQGAWLQRVFAERAFLAVELHREQD 204
             +G   L  A+     + ++ G  AL       +A    W + VFA+R +L ++     +
Sbjct: 124  AEGLIALSGAKEGEVGQALLNGDEAL------AEARLAEW-RDVFADRFYLEIQRTSRVN 176

Query: 205  DAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHLFRNGE 264
            D   L A  ALA + G   +A+ DV+  ++ D    +T   I     L D       + +
Sbjct: 177  DEEHLHAAAALADRTGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQ 236

Query: 265  RHLRPRRALGNIY---PHALLQASVELAQRCTFDLSKVQYTYPRELVPQGHTPASYLRQL 321
            ++L+    +  ++   P AL + +VE+A+RC  ++    Y  P   VP+G T   YLRQ+
Sbjct: 237  QYLKTPAEMAELFSDLPEAL-ENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQV 295

Query: 322  TEAGMRERW----PEGAP-----AQV-VAQIDSELELIAYKGYEAFFLTVQDVVRFARAQ 371
            +  G+ ER     P+  P      QV + +++ EL  I   G+  +FL V D +++A+  
Sbjct: 296  SFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNN 355

Query: 372  GI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHERREEV 430
            G+ +  GRGS A S V Y L IT ++P    LL  RFL+ ER   PD DVDF  + R+ V
Sbjct: 356  GVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRV 415

Query: 431  LQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDTPMEQ 490
            + YV   YGR   +   T      K+ VRDVA+  G        L+    +  G T    
Sbjct: 416  IDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMT---- 471

Query: 491  RIAEAGFDLANPLINKILAVTEHLRDH----------PRHLSQHVGGFVISDEPLSMLVP 540
               E  +++  PL    LAV E  R+            R   +H GG VI+   L+   P
Sbjct: 472  --LEKAYEMEEPL-RDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAP 528

Query: 541  VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRD----YTIA 596
            +         + Q+DKDD+E+  L+K D L L  LT I+  L+ +   + +       I 
Sbjct: 529  IACDEEGGGLVTQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINID 588

Query: 597  TLPGEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDM 656
             +P +D  TY+++Q+A+T  VFQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  M
Sbjct: 589  FIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGM 648

Query: 657  VHPYLRRRQGYEPVSFPSP-----GVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQ 710
            V  ++ R+ G   VS+P P     G+E +L  T GI L+QEQVM++  + AGYT   AD 
Sbjct: 649  VDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADM 708

Query: 711  LRRSMAAWRRGGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAK 770
            LRR+M   ++  +M   R    E  +  G   E    IF+ ++ F  YGF +SH+A++  
Sbjct: 709  LRRAMGK-KKPEEMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 771  LVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDW 830
            + Y + WLK H P+ F   +L+A          ++++ R       ++ + P DV  S++
Sbjct: 768  VSYQTAWLKAHYPSPFMAAVLSADMHNTDKVVILIEECRS-----MKLRIDPPDVNVSEF 822

Query: 831  DNILVGGRPWHSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQR-PFADIGDLCLR- 888
               +             +   I  GL  V G+ E  VE I   RA+  PF D+ D C R 
Sbjct: 823  KFTV------------NDDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARI 870

Query: 889  ----------------AALDEKARLALAEAGALQSMVGNRNAA-------------RWAM 919
                             ALD        EA A Q+ +    A              + A 
Sbjct: 871  DLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTAR 930

Query: 920  AGVEARRPLLPGSPAERAVELPAPRAG-------EEILADYRAVGLSLRQHPMALLRPQM 972
            +       L  G  AE   ++ A           E +  +   +GL L  HP+     ++
Sbjct: 931  SAESGHMDLFGGLFAEPEADVYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEV 990

Query: 973  LQRRILGLRELQARRHGSGVHVAGLVTQRQRPATAKGTI--FVTLEDEHGMINVIVWSHL 1030
              RR    R +  R       +AGL+   +     KG    F+TL+D  G I   +++  
Sbjct: 991  --RRFARQRIIDLRPARGEQTIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLFAE- 1047

Query: 1031 AMRRRRALLESRLLAV 1046
            A    +ALL++  L V
Sbjct: 1048 AFNSAQALLQTDALVV 1063