Pairwise Alignments

Query, 1082 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1026 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 605/1038 (58%), Positives = 743/1038 (71%), Gaps = 21/1038 (2%)

Query: 48   YAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLI 107
            YAELHCLS+FSF RGASSA +LF RA   GY ALAITDECSLAGIVR  +AS+ TG+ LI
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 64

Query: 108  VGSEFTLVDGTRFVLLVENAHGYPQLCSVITTGRRAAGKGAYRLGRAEVEAHFRD-VVPG 166
            +GSE  +  G + VLLVEN  GY  LC +IT  RR A KG Y+  R ++    RD  + G
Sbjct: 65   IGSELQIEGGPKLVLLVENLTGYQALCQLITRARRRAEKGRYQALREDL----RDWPLEG 120

Query: 167  VFALWLPGDQPQAEQGAWLQRVFAERAFLAVELHREQDDAARLQALQALAQQLGMSALAS 226
            + A+WLP       +G WL   F ER +L +ELHR  DDA +L+     A +LG+SA+A 
Sbjct: 121  LLAIWLPDHDGADAEGRWLLDRFRERLWLGIELHRGPDDALQLRQSLTQASRLGISAVAC 180

Query: 227  GDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHLFRNGERHLRPRRALGNIYPHALLQASV 286
            GDV M  R  R +QD +TAIRH LP+A+ G HLF NGERHLR R  L  +YP  LL  ++
Sbjct: 181  GDVHMHARGRRALQDCMTAIRHHLPVAEAGRHLFPNGERHLRSREELAQLYPAELLAETL 240

Query: 287  ELAQRCTFDLSKVQYTYPRELVPQGHTPASYLRQLTEAGMRERWPEGAPAQVVAQIDSEL 346
             ++QRC F L +++Y YP ELVP GH   S+LR+L E G R RWP+G P +  AQ++ EL
Sbjct: 241  RISQRCHFQLDQLKYHYPHELVPPGHDTTSWLRKLVEDGARWRWPDGIPEKARAQLEHEL 300

Query: 347  ELIAYKGYEAFFLTVQDVVRFARAQGILCQGRGSSANSAVCYALGITAVNPSETRLLMAR 406
            ELIA   YE++FLTV D+VRFAR QGILCQGRGS+ANS+VC+ LGIT ++P  ++LL  R
Sbjct: 301  ELIADLHYESYFLTVHDIVRFAREQGILCQGRGSAANSSVCFVLGITELDPVRSKLLFER 360

Query: 407  FLSKERDEPPDIDVDFEHERREEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFG 466
            FLS+ER+EPPDIDVDFEH+RREEV+QYV+ +YGR RAAL A    YR   A+RDVAKA G
Sbjct: 361  FLSRERNEPPDIDVDFEHDRREEVIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALG 420

Query: 467  LPPDQIALLANCYGWGNGDTPMEQRIAEAGFDLANPLINKILAVTEHLRDHPRHLSQHVG 526
            LPPDQI  LA C G  +   P + ++ EAGFD  NP++ ++L +T+ L   PRHLSQH G
Sbjct: 421  LPPDQINALAGCCGRWSEHIPDDSQLREAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPG 480

Query: 527  GFVISDEPLSMLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVR 586
            GFVIS++PL  LVP+ENA+MADRT+IQWDKDDL+ + LLKVD LALGML+ IR+  DL+ 
Sbjct: 481  GFVISEQPLDTLVPIENASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIE 540

Query: 587  GHRGRDYTIATLPGEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAI 646
             +RG  +TIATLP ED  TY+MI RADT+GVFQIESRAQMAMLPRL+P+ FYDLVI+VAI
Sbjct: 541  HYRGTRWTIATLPAEDKPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAI 600

Query: 647  VRPGPIQGDMVHPYLRRRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMEL-VIHAGYTD 705
            VRPGPIQGDMVHPYLRRR   E V +PS  ++ +  RTLG+PLFQEQVMEL ++ A YT 
Sbjct: 601  VRPGPIQGDMVHPYLRRRNKEEDVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTP 660

Query: 706  SEADQLRRSMAAWRRGGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHA 765
             EAD+LRR+MAAW+R G +EPHRVR+ E M  +GY P+FI +IFEQIKGFGSYGFP+SHA
Sbjct: 661  DEADKLRRAMAAWKRHGSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHA 720

Query: 766  ASFAKLVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDV 825
            ASFA L YASCWLKRHEPAAFAC L+N+ PMGFY+  QI+QDAR     R  +E+ PVDV
Sbjct: 721  ASFALLTYASCWLKRHEPAAFACALINSWPMGFYNPDQILQDAR-----RHGLEIRPVDV 775

Query: 826  LHSDWDNILVGGRPWHSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDL 885
             HS WD  L        +    EQPAIRLGLR V    E    RI AAR ++PF +I DL
Sbjct: 776  RHSGWDCSL--------EPCSQEQPAIRLGLRMVRSFREADARRIEAARQRQPFTNIHDL 827

Query: 886  CLRAALDEKARLALAEAGALQSMVGNRNAARWAMAGVEARRPLLPGSPA--ERAVELPAP 943
            CLRA L+ +AR  LA+AG L+ + G+R+ ARWA+AGVE + PL    PA  E  + LP P
Sbjct: 828  CLRAELEPRAREQLADAGVLRGLAGHRHRARWAVAGVEPQLPLFASLPATEETPINLPLP 887

Query: 944  RAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQR 1003
               E++L DY  +G +L  HP+ALLR ++  RR    REL    HG  V +AGLV  RQR
Sbjct: 888  SVSEDLLNDYATLGTTLGPHPLALLRDELKARRCRSSRELAMIEHGRPVSIAGLVIGRQR 947

Query: 1004 PATAKGTIFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGRWERVDGVEHLIAGD 1063
            P TA G IFVTLEDE GM+NV+VW  LA R+RR L++S+LL V G  E   GV HLIAG 
Sbjct: 948  PQTASGVIFVTLEDEFGMVNVVVWRDLAERQRRPLIQSQLLRVDGHLESASGVRHLIAGR 1007

Query: 1064 LYDLSDLLGEMQLPSRDF 1081
            L DL+ LL  + + SRDF
Sbjct: 1008 LSDLTPLLTGLDVRSRDF 1025