Pairwise Alignments

Query, 1082 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  825 bits (2132), Expect = 0.0
 Identities = 481/1069 (44%), Positives = 656/1069 (61%), Gaps = 48/1069 (4%)

Query: 48   YAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLI 107
            + EL   ++FSFL GA+ AE++   A   G + L I D  S+AG+VR    ++  G    
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYPFQ 66

Query: 108  VGSEFTLVDGTRFVLLV-ENAHGYPQLCSVITTGRRAAGKGAYRLGRAEVEAHFRDVVPG 166
             G+     DGT  +L   +N  G+  LC +++ G   + KG   L  A++     +++  
Sbjct: 67   PGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELL-- 124

Query: 167  VFALWLPGD-QPQAEQGAWLQRVFAERA----FLAVELHREQDDAARLQALQALAQQLGM 221
               + + G+ +P+ E    L     E A    +L +  H +  D      L A+A++ G+
Sbjct: 125  --LIVMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIARKAGI 182

Query: 222  SALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHLFRNGERHLRPRRALGNI---YP 278
              LA+ D        R + D +T+IR  +P+A  G  L +N ERHL+  R +  +   YP
Sbjct: 183  GLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLFSDYP 242

Query: 279  HALLQASVELAQRCTFDLSKVQYTYPRELVPQGHTPASYLRQLTEAGMRERWPEGAPAQV 338
             A+     +  +   F L ++ + YP E    G TPA  LR+L   G  ER+PEG P +V
Sbjct: 243  EAIANTR-KFFRELAFSLDELSHQYPDENA-DGETPAESLRRLVAEGAAERYPEGVPEKV 300

Query: 339  VAQIDSELELIAYKGYEAFFLTVQDVVRFARAQGILCQGRGSSANSAVCYALGITAVNPS 398
            + QID ELELI  K YE +FLTV  +V+FAR+  ILCQGRGS+ANS+VC+ LGIT V+P 
Sbjct: 301  MRQIDYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITDVDPQ 360

Query: 399  ETRLLMARFLSKERDEPPDIDVDFEHERREEVLQYVYTKYGRERAALAATVICYRGKSAV 458
            +  LL  RFLSK+RDEPPDIDVDFEHERREEV+QY+Y  YG+E A L A VI YR +SA 
Sbjct: 361  KFTLLFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAG 420

Query: 459  RDVAKAFGLPPD-QIALLANCYGWGNGDTPMEQRIAEAGFDLANPLINKILAVTEHLRDH 517
            R+VAKAFGL  D Q AL+++ +GWG      E++   AG D A+PL  ++LA    L + 
Sbjct: 421  REVAKAFGLSEDVQSALVSSIWGWGTSPF-TEEQAKGAGLDAADPLTRRVLAYASLLMNF 479

Query: 518  PRHLSQHVGGFVISDEPLSMLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTC 577
            PRHLSQHVGGFVI+ + L  +VP+ N AM DR +I+WDKDDL+ +K+LKVD LALGMLTC
Sbjct: 480  PRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTC 539

Query: 578  IRKTLDLVRGHRGRDYTIATLPGEDA-ATYKMIQRADTVGVFQIESRAQMAMLPRLKPRE 636
            + K   L+  H G   T+A +  +   A Y MI RADTVGVFQIESRAQM+MLPRL+PRE
Sbjct: 540  LAKGFKLLEAHYGEPITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPRE 599

Query: 637  FYDLVIEVAIVRPGPIQGDMVHPYLRRRQGY---EPVSFPSPGVEEILGRTLGIPLFQEQ 693
             YDLVIEVAIVRPGPIQG+MVHPYL+RR+     E V +PSP ++ +L RTLG+PLFQEQ
Sbjct: 600  MYDLVIEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQ 659

Query: 694  VMELVI-HAGYTDSEADQLRRSMAAWRRGGDMEPHRVRIRELMAGRGYAPEFIDQIFEQI 752
             M++ I  AG++ SEAD+LRR+MA ++R G +     ++ E M    Y  EF ++ F QI
Sbjct: 660  AMQIAITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQI 719

Query: 753  KGFGSYGFPQSHAASFAKLVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGS 812
            KGFG YGFP+SHAASFA LVYAS WLK + P  F   LLNAQPMGFY+ +Q+V+DAR   
Sbjct: 720  KGFGEYGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAR--- 776

Query: 813  PERQRVEVLPVDVLHSDWDNILVGG--------RPWHSDADP--GEQPAIRLGLRQVSGL 862
                 V +LPVD+ HSDWD +L G          P H+        + A+RLG R V GL
Sbjct: 777  --EHGVRMLPVDINHSDWDALLEGEGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGL 834

Query: 863  SEKVVERIVAARAQRPFADIGDLCLRAALDEKARLALAEAGALQSMVGNRNAARWAMAGV 922
             +  ++ +VA R +  +  + DL LR+ L       LA+A A +S+  +R AA WA+  +
Sbjct: 835  KQTDMKALVARRGE-GYRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVKAL 893

Query: 923  E-----ARRPLLPGSPA-----ERAVELPAPRAGEEILADYRAVGLSLRQHPMALLRPQM 972
            +      R PL  G+ +     E  V LP   AGE+++ DYR + LSL+ HP++ +R   
Sbjct: 894  DEQSAVERLPLFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDF 953

Query: 973  LQRRILGLRELQARRHGSGVHVAGLVTQRQRPATAKGTIFVTLEDEHGMINVIVWSHLAM 1032
             +R IL  R+L A   G  V VAGLV  RQRP +A G IF+T+EDE G+ N+IVW     
Sbjct: 954  SRRGILRSRDLAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEKTFQ 1013

Query: 1033 RRRRALLESRLLAVRGRWERVDGVEHLIAGDLYDLSDLLGEMQLPSRDF 1081
            + RR ++ SRL+ VRGR +   GV H++A  L D++ +LG ++  +R F
Sbjct: 1014 KYRRQVMGSRLVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062