Pairwise Alignments

Query, 1082 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1145 a.a., DNA polymerase III, alpha subunit from Marinobacter adhaerens HP15

 Score =  338 bits (866), Expect = 2e-96
 Identities = 281/1061 (26%), Positives = 483/1061 (45%), Gaps = 99/1061 (9%)

Query: 62   GASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLIVGSEFTLVDGT--- 118
            G    + L  R    G  A+ +T++ ++  +VR  +A+   GV+ I+G++  L +     
Sbjct: 4    GLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPDEPE 63

Query: 119  ---RFVLLVENAHGYPQLCSVITTGRRAAGKGAYRLGRAEVEAHFRDVVP-GVFALW--- 171
               R  LL  +  GY  L  +I+ G         R G+  ++  + +  P G+ AL    
Sbjct: 64   NPFRITLLARDNDGYLNLTEIISLGYTEG----QRFGKPIIQRKWLEARPNGLIALSGSR 119

Query: 172  -------LPGDQPQA--EQGAWLQRVFAERAFLAVELHREQDDAARLQALQALAQQLGMS 222
                   L   +P+   E+  +   ++ +  +L ++      D   L     LA  LG+ 
Sbjct: 120  MGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLSVELAGALGLP 179

Query: 223  ALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHLFRNGERHLRPRRALGNIY---PH 279
             +A+ DV   +  D    +    I  +  L D       + +++LR    +  ++   P 
Sbjct: 180  VVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADEMIELFSDIPE 239

Query: 280  ALLQASVELAQRCTFDLSKVQYTYPRELVPQGHTPASYLRQLTEAGMRERWP-------- 331
            A+ + +VE+A+RC+  +   +Y  P   +P G T   Y R+++E G+ ER          
Sbjct: 240  AI-ENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDDYFRKVSEEGLEERLAKTLSKDDP 298

Query: 332  --EGAPAQVVAQIDSELELIAYKGYEAFFLTVQDVVRFARAQGI-LCQGRGSSANSAVCY 388
              +        +++ EL++I   G+  +FL V D +++A+  G+ +  GRGS A S V Y
Sbjct: 299  EYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAY 358

Query: 389  ALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHERREEVLQYVYTKYGRERAALAAT 448
            A  IT ++P E  LL  RFL+ ER   PD DVDF  E R+ V++Y   KYGRE  +   T
Sbjct: 359  AQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYTAQKYGREAVSQIIT 418

Query: 449  VICYRGKSAVRDVA----KAFGLPPDQIALLANCYGWGNGDTPMEQRIAEAGFDLANPLI 504
                  K+ VRDVA    K++GL  D+++ +         +  +EQ      F   +   
Sbjct: 419  FGTMAAKAVVRDVARVQGKSYGL-ADKLSKMIPFEPGMTLEKALEQEPQLVEFLENDEEA 477

Query: 505  NKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVENAAMADRTIIQWDKDDLETMKL 564
             +I  +   L    R+  +H GG VI+   ++   P+         + Q+DK D+E   L
Sbjct: 478  QEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSLVTQFDKGDVEDAGL 537

Query: 565  LKVDCLALGMLTCIRKTLDLVRGHRGR----DYTIATLPGEDAATYKMIQRADTVGVFQI 620
            +K D L L  LT I+  L+++   R +       I  +P +D  ++ M+++A+T  VFQ+
Sbjct: 538  VKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSFDMLKKAETTAVFQL 597

Query: 621  ESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGYEPVSFPSP----- 675
            ESR    ++ RL+P    D++  VA+ RPGP+Q  MV  ++ R+ G +P+SFP P     
Sbjct: 598  ESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHGRQPMSFPHPDYQYE 657

Query: 676  GVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRGGDMEPHRVRIREL 734
            G++ +L  T G+ L+QEQVM++  + AGYT   AD LRR+M   ++  +M   +    + 
Sbjct: 658  GLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGK-KKPEEMAKQKQFFLDG 716

Query: 735  MAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHEPAAFACGLLNAQ 794
                G      + IF+ ++ F  YGF +SH+A++A + Y + WLK H PA F   +L A 
Sbjct: 717  CEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVLTAD 776

Query: 795  PMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWHSDADPGEQPAIRL 854
                     +V++ R       ++++L  DV  S++   +             ++  I  
Sbjct: 777  MQNTDKVVTLVEECR-----NMKLDLLVPDVSRSEYTFTV------------NDEGQIVY 819

Query: 855  GLRQVSGLSEKVVERIVAARAQ-RPFADIGDLCLRAAL---DEKARLALAEAGALQSMVG 910
            GL  + GL E  ++ IV  R    PF DI D C R  L   +++A  AL  +GA+  +  
Sbjct: 820  GLGAIKGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGA 879

Query: 911  NRNAARWAM------AGVEARRPLL--------------PGSPAERAVELPAPRAGEEIL 950
            +R     ++      A  ++R   +               G P E    +      + + 
Sbjct: 880  SRAQLMASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLK 939

Query: 951  ADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQRPATAKGT 1010
             +   +GL L  HP      ++  RR +       + + S   VAGLV  ++   T  G+
Sbjct: 940  GEKDTLGLYLTGHPFDEYEKEV--RRFVRSSIADLKPNKSPQRVAGLVVAQRTMKTRTGS 997

Query: 1011 --IFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGR 1049
               F+TL+D    I   ++S      R  L   +++ V G+
Sbjct: 998  TMCFITLDDRSARIEATLFSEAFFENRELLQSDQVIVVEGQ 1038