Pairwise Alignments

Query, 525 a.a., Serine protease precursor MucD/AlgY associated with sigma factor RpoE from Xanthomonas campestris pv. campestris strain 8004

Subject, 471 a.a., periplasmic serine protease, Do/DeqQ family from Pseudomonas stutzeri RCH2

 Score =  375 bits (962), Expect = e-108
 Identities = 215/474 (45%), Positives = 284/474 (59%), Gaps = 31/474 (6%)

Query: 50  AGLPDFTNLVEQVGPGVVNIETTITRKDAMARSQRGGPGGRGGGAMPDDEQMPEFFKRFF 109
           A LPDFT LVE   P VVNI T           ++  P       MP+ E +P  F+ FF
Sbjct: 25  ADLPDFTPLVESASPAVVNIST-----------KQKVPARGATAQMPELEGLPPIFREFF 73

Query: 110 GPDF-QMPGGPRQGPGQGDDDGGIAGKSMGSGFIISADGYVLTNHHVVDGASEVTVKLTD 168
                QMPG P +G  +         +S+GSGFIIS DGYVLTN+HVV GA E+ V+L D
Sbjct: 74  EHSIPQMPGAPGRGQQR-------EAQSLGSGFIISDDGYVLTNNHVVAGADEIIVRLPD 126

Query: 169 RREFKAKVVGSDEQFDVALLKIEAKGLPTVRIGDSNTLKPGQWVVAIGSPFGLDHSVTAG 228
           R E +AK++G+D + DVA+LK+E KGLPTV+IG S+ LK G+WV+AIGSPFG DH+VTAG
Sbjct: 127 RSELEAKLIGADPRSDVAVLKVEGKGLPTVKIGRSDELKAGEWVLAIGSPFGFDHTVTAG 186

Query: 229 IVSATGRSNPYADQRYVPFIQTDVAINQGNSGGPLLNTRGEVVGINSQIFSASGGYMGIS 288
           IVSATGRS P  ++ YVPFIQTDVAIN GNSGGPL N +GEVVGINSQIF+ SGG+MG+S
Sbjct: 187 IVSATGRSLP--NESYVPFIQTDVAINPGNSGGPLFNLKGEVVGINSQIFTRSGGFMGLS 244

Query: 289 FAIPIDLAFSAAEQIKASGHVSRGMLGVAVGPIDTLKAQGLGLPDTRGALVNDIPAGSPA 348
           FAIPID+A   A Q++  G V+RG LGV +  ++   A+  GL    GALV  +  G PA
Sbjct: 245 FAIPIDVAMDVANQLRTDGKVNRGWLGVVIQEVNKDLAESFGLERPAGALVAQVMDGGPA 304

Query: 349 GKAGIEVGDVIRSVNGKEIAVASDLPPMIGLMPPGTKVSLNVLRDGKPRQVTVTLGTLEN 408
            ++G+ VGDVI S+NGK I +++DLP ++G + PG+K  + V+RDG  + + V++G +  
Sbjct: 305 ARSGLRVGDVILSLNGKPIVMSADLPHLVGALKPGSKARMEVVRDGDRKMLDVSIGAMPE 364

Query: 409 ESGSSAPRTAADDSKPSAPASVELLGLQVADLTAAERSRMGLEAGEGVRIASVTGSAARS 468
           E    A      +       S   LG++V +LT  E  +  L+   GV I  +    A  
Sbjct: 365 EGEPVAASGGGQE------RSDNRLGVKVTELT--EEQKKSLDLPGGVVITEILNGPA-- 414

Query: 469 TQPPLAPGLVIARVGRTKVGSVAELNRALASYKKGDVVMLLVTDGKATSYVALK 522
               L PG VI  +    + S A   R      K   V + V      S++  K
Sbjct: 415 AMIGLRPGDVITHLNNQAINSAATFGRVAEQLPKNRSVSMRVLRQGRASFITFK 468



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 301 EQIKASG---HVSRGMLGVAVGPIDTLKAQGLGLPDTRGALVNDIPAGSPAGKAGIEVGD 357
           E + ASG     S   LGV V  +   + + L LP   G ++ +I  G PA   G+  GD
Sbjct: 367 EPVAASGGGQERSDNRLGVKVTELTEEQKKSLDLPG--GVVITEILNG-PAAMIGLRPGD 423

Query: 358 VIRSVNGKEIAVASDLPPMIGLMPPGTKVSLNVLRDGKPRQVTVTL 403
           VI  +N + I  A+    +   +P    VS+ VLR G+   +T  L
Sbjct: 424 VITHLNNQAINSAATFGRVAEQLPKNRSVSMRVLRQGRASFITFKL 469