Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

 Score =  289 bits (739), Expect = 1e-82
 Identities = 165/428 (38%), Positives = 241/428 (56%), Gaps = 10/428 (2%)

Query: 17  ITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRV 76
           I  L H G G+A       K  F+ GALPGE V+ + T     +   + ++VL+ S +RV
Sbjct: 22  IERLDHQGSGLAFLHK---KPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERV 78

Query: 77  APRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRK 136
           AP C H+  C GC LQHL+ + QI  KQ+ L   + +    +     P +  D  GYRR+
Sbjct: 79  APFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAP-VCSDDQGYRRR 137

Query: 137 GRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDIP 196
            R S+   +K  +  +GFR    + + +++ C  + P +   +P L AL+        + 
Sbjct: 138 ARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLG 197

Query: 197 QIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPL 256
            +E + GD+   L +RHL  L  +D+Q L +FA  +   ++L     +  H     E P 
Sbjct: 198 HVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHV--QGEAPY 255

Query: 257 SFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLA 316
                +    L+F P  FIQVN ++NQ M+  AL  L+  P +RVLDLFCGLGNFTLPLA
Sbjct: 256 C---EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLA 312

Query: 317 RTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPP 376
           +  + VVGVEG   +V  A  NA+ N ++N  FY A+L QD    +W +Q F K+LLDP 
Sbjct: 313 KQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPA 372

Query: 377 RSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHVE 436
           R+GA  ++ QL     KR+VYVSC+P +LARD+  L++ QGF L   G +DMFPHT+H+E
Sbjct: 373 RAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLS-QGFRLEKLGMLDMFPHTSHLE 431

Query: 437 SIAVFEKR 444
           S+A+F K+
Sbjct: 432 SMALFVKK 439