Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli Nissle 1917

 Score =  303 bits (776), Expect = 7e-87
 Identities = 169/444 (38%), Positives = 242/444 (54%), Gaps = 26/444 (5%)

Query: 5   RNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAK 64
           R    R     ++ DL   G+GVAR +G   K  FI G LP E      T   + +  AK
Sbjct: 9   RRTTTRQIITVSVNDLDSFGQGVARHNG---KTLFIPGLLPQENAEVTVTEDKKQYARAK 65

Query: 65  TVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLP 124
            V  L  SP+R  PRCPHFGVC GC  QH     Q  +K   L         +    V  
Sbjct: 66  VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHEVSE 118

Query: 125 ALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAA 184
            +    WGYRR+ R S+  + K  +  +GFR+     + D+  C  ++PQ+   +P++ A
Sbjct: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRA 178

Query: 185 LVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVD 244
            +  +   R +  +E +       + +RH  PLS+ D + L  F+ +    ++L P    
Sbjct: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDS-- 236

Query: 245 SVHPLWPQEV--PLSFRLPKWD---VELAFRPLDFIQVNASLNQKMIAHALALLDAKPDD 299
                   E+   +S  +P +D   + L F P DFIQVNA +NQKM+A AL  LD +P+D
Sbjct: 237 --------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPED 288

Query: 300 RVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQR 359
           RVLDLFCG+GNFTLPLA     VVGVEG   LV + ++NA+ NGL N  FY  +L +D  
Sbjct: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348

Query: 360 QTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFS 419
           +  W + GFDK+LLDP R+GA  V+QQ+   +  RIVYVSC+P +LARD+  L+ + G++
Sbjct: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYT 407

Query: 420 LLSAGAMDMFPHTAHVESIAVFEK 443
           +     +DMFPHT H+ES+ +F +
Sbjct: 408 IARLAMLDMFPHTGHLESMVLFSR 431