Pairwise Alignments

Query, 830 a.a., FIG003033: Helicase domain protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1475 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  232 bits (591), Expect = 1e-64
 Identities = 239/821 (29%), Positives = 350/821 (42%), Gaps = 82/821 (9%)

Query: 18  WFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRTPPATA 77
           WF++   AP P Q   W     G S L+  PTGSGKTL AF   + + L  +G      A
Sbjct: 42  WFSRSFPAPTPAQAAAWPLIRAGRSTLVAAPTGSGKTLTAFLAAI-DGLVQQGLAEGGLA 100

Query: 78  VARGRRQPQRSLQVLWITPLRALAADTARALREPVEALG----------LDWQVGLRTGD 127
            A          +VL+++PL+AL+ D    L EP+  +           L+ +  +RTGD
Sbjct: 101 DAT---------RVLYVSPLKALSNDIHINLEEPLAGITAELARLGLPPLEIRTAVRTGD 151

Query: 128 ASARDKRLARSGKLDVLVTTPESLALLLSYPDTAPQLAALRCVIVDEWHELLGNKRGVLL 187
               ++   R     +LVTTPESL +LLS       LA ++ VIVDE H + GNKRG  L
Sbjct: 152 TPQAERNAMRKRVPHILVTTPESLYVLLSSASGREMLADVQSVIVDEIHAIAGNKRGSHL 211

Query: 188 QLCLARLRSWS--PALRIWGLSATLGNLAQARDVLLPHQPDAALVSGVKPRAMTLETLLP 245
            L L RL +    P +R+ GLSAT   +      L   +    +V     RA  L   +P
Sbjct: 212 ALSLERLEALCNRPLVRV-GLSATQKPIDAVARFLAGVERPCEIVDIGHGRARDLALEVP 270

Query: 246 ETGERFPWAGHLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQALSAVWPEDAATLAL 305
                   +         R+     E RT+LVF NTR  AE   + L+      A  +A 
Sbjct: 271 SVPLEAVMSNDAWALVYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERL--GAEVVAA 328

Query: 306 HHGSLDPALRTAAEHGLRDGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAG 365
           HHGSL    R +AE  L+ G LR +VAT+SL+LG+D   V+ V Q+GSP+ I+  LQR G
Sbjct: 329 HHGSLAREQRLSAEQKLKRGELRVLVATASLELGIDIGDVELVCQLGSPRSISAFLQRVG 388

Query: 366 RARHRPGESGHVVCVPSHALELLEYAAARRAIAQGQIETRPPPRLSLDVLAQHCVTLALG 425
           RA H+          P    +L+E AA   A+ +G+++T   P+  LDVLAQ  V     
Sbjct: 389 RAGHQVAGVSKGRLFPGSRDDLIECAALFDAVRRGELDTLKIPQAPLDVLAQQIVAEVAC 448

Query: 426 GGFQADALLREVRGTDAFATLDEATWQAVLDFIVQGGSALAHYPDFHKVVRDDAGIYRVT 485
             ++  ALL+ +R    +A LDEAT+QA+L  + +G +    +      +  D     + 
Sbjct: 449 REWEEGALLQLLRRAMPYAALDEATFQALLRMLAEGYT--TRHGTRGAYLHRDLATRSLR 506

Query: 486 DRRVALRHRLSIGTITSDGSVRVQFL--RGGRLGAVEEQFVGRLKRGDRFQFAGRLLELV 543
            RR      L+ G   +D +     L  +G  +G V E F      GD FQ       ++
Sbjct: 507 GRRGGRLTALTSGGTIADNADYAVLLEPQGLNIGTVNEDFAIESLAGDVFQLGNTSYRIL 566

Query: 544 RLEDMTAYVRIAKGGSGVVPKWMG---GRM-PLSSALGR---EVEAVFADPGDAPEMHTL 596
           ++E     V  A+G    +P W+G   GR   LS A+ R   E++    D   A +    
Sbjct: 567 KIESGRVRVEDAQGMPPSIPFWLGEAPGRSDELSFAVARLRDEIDRRLHDAATAADDAAK 626

Query: 597 AP----------------------------------LLQLQSSLSALPGPGHLLVET-IK 621
           +P                                  L + +S+L ALP    L++E    
Sbjct: 627 SPGVVSSASSRLAPAIDWLTGSLGLSDDAARQIVEYLARARSALGALPTQQRLVMERFFD 686

Query: 622 ARDGRHLFVYPFAGRQVNEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQDVPVDAAL 681
              G  L ++   G ++N      L  R+ R        AA +   +LS +       A 
Sbjct: 687 EPGGTQLVIHSPYGSRINRAWGLALRKRFCRTFNFELQAAATEDAIILSLSTSHSFPLAD 746

Query: 682 LQELLSPARLFEDLRDSLNLGELARRQFREIARVAGLLSPSLPGRAPRSLRQLQASSGLL 741
           +   L  A   + L  +L    L   ++R IA  A  L     GR      Q   S  LL
Sbjct: 747 VWRYLHSASAEQVLIQALLDAPLFGVRWRWIATTALALPRMAGGRKVAPQLQRMKSEDLL 806

Query: 742 YDVLQRFDPEHLLLAQ---AEREVFEGQLEFARLASALEDC 779
             V     P+ +   +    ERE+ +  L    +   L+DC
Sbjct: 807 ATVF----PDQVACLENIVGEREIPDHPL----VRQTLDDC 839