Pairwise Alignments

Query, 830 a.a., FIG003033: Helicase domain protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 802 a.a., DNA damage response helicase, ligase-associated (from data) from Sphingomonas koreensis DSMZ 15582

 Score =  458 bits (1178), Expect = e-133
 Identities = 304/785 (38%), Positives = 418/785 (53%), Gaps = 29/785 (3%)

Query: 18  WFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRTPPATA 77
           WFA RGW P   Q D+      G   LL   TG+GKTLA F   L E +           
Sbjct: 11  WFASRGWTPRRHQLDMLAAGRAGRHALLVAATGAGKTLAGFLPTLTELI----------- 59

Query: 78  VARGRRQPQRSLQVLWITPLRALAADTARALREPVEALGLDWQVGLRTGDASARDKRLAR 137
                 QP   L  L+I+PL+ALA D  R L  P+E +GLD +V  RTGD S   K   R
Sbjct: 60  -----EQPGEGLHTLYISPLKALAVDVQRNLLTPIEEMGLDIRVETRTGDTSHEKKVRQR 114

Query: 138 SGKLDVLVTTPESLALLLSYPDTAPQLAALRCVIVDEWHELLGNKRGVLLQLCLARLRSW 197
           +    +L+TTPESL+LLLSY D+    A LR V+VDE H     KRG LL L LARL++ 
Sbjct: 115 ARPPQILLTTPESLSLLLSYEDSFLMFAGLRTVVVDEVHAFATGKRGDLLALALARLQTL 174

Query: 198 SPALRIWGLSATLGNLAQARDVLLPH-QPDAA-LVSGVKPRAMTLETLLPETGERFPWAG 255
           +P +R   LSAT+ +    R  L PH + DA  LV+G       +  LLPE   R PW+G
Sbjct: 175 APGMRRVALSATVADPDGYRAWLAPHGEIDAVELVTGESGAEPDIAILLPE--GRVPWSG 232

Query: 256 HLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQALSAVWPEDAATLALHHGSLDPALR 315
           H GL  + +V+ ++   +T++VF NTR+ AEL  Q L  V  E    + +HHGSL    R
Sbjct: 233 HSGLYAIPQVMAEIETHKTTIVFCNTRSLAELVFQNLWKV-NELKLPIGVHHGSLSLEAR 291

Query: 316 TAAEHGLRDGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAGRARHRPGESG 375
             AE  + +G LR +VAT+SLDLGVD+  VD V+Q+G+PKG +RLLQR GRA HR  E  
Sbjct: 292 QRAEQAMAEGRLRALVATASLDLGVDWGDVDCVIQMGAPKGSSRLLQRIGRANHRLDEPS 351

Query: 376 HVVCVPSHALELLEYAAARRAIAQGQIETRPPPRLSLDVLAQHCVTLALGGGFQADALLR 435
             V VP +  E LE  AA  A+  G+++       +LDVLAQH + LA    F A  LLR
Sbjct: 352 EAVLVPGNRFEYLEARAALDAVEAGELDPDIFRPGALDVLAQHVMGLACAAPFDAAELLR 411

Query: 436 EVRGTDAFATLDEATWQAVLDFIVQGGSALAHYPDFHKVVRDDAGIYRVTDRRVALRHRL 495
           E++G   ++ L E  ++AVL+FI  GG AL  Y  F ++ RD  G++RVT      +HRL
Sbjct: 412 EIQGALPYSALSEDVFEAVLNFIADGGYALRAYDRFKRLTRDKDGLWRVTKPAFVAQHRL 471

Query: 496 SIGTITSDGSVRVQFLRGGRLGAVEEQFVGRLKRGDRFQFAGRLLELVRLEDMTAYVRIA 555
           + G I     + V+F  G RLG VEE F   L  GDRF FAG  LE+ R+E     VR  
Sbjct: 472 NAGIIVEAPMLEVRFRNGRRLGRVEEAFGASLSPGDRFFFAGLALEVERVEVTDIIVRAT 531

Query: 556 KGGSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMHT-LAPLLQLQSSLSALPGPGH 614
              +  V  +MG R+ ++S L   V   FA+P         +   L++Q+  S LP PG 
Sbjct: 532 TKTARFV-SYMGARLAITSTLAARVRRFFAEPETWSRFPADVREWLEVQAHRSRLPAPGK 590

Query: 615 LLVETIKARDGRHLFVYPFAGRQVNEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQD 674
           LLVET       H+  Y F G   ++ L  L+  R          F ANDY   +   + 
Sbjct: 591 LLVETFPHDGRHHMVAYCFEGWNAHQSLGMLVTRRMEALGLKPVGFVANDYALAVYGLEK 650

Query: 675 VPVDAALLQELLSPARLFEDLRDSLNLGELARRQFREIARVAGLLSPSLPGRAPRSLRQL 734
           +   A     L SP  L  +  + +    L +R FRE+A + GL+    PG+  ++ RQ+
Sbjct: 651 IEDPA----PLFSPDILEHEFVEWVQGSALLKRAFREVAIIGGLVERQQPGK-KKTGRQV 705

Query: 735 QASSGLLYDVLQRFDPEHLLLAQAEREVFEGQLEFARLASALEDCAARVLRLCTPRSLTP 794
             S+ L+YDVL++++P+HLLL  A  +      +  RLA  L+    R+  +   R ++P
Sbjct: 706 TFSTDLIYDVLRKYEPDHLLLRAAWADARARMTDIGRLARLLDTAVDRIEHVDLDR-VSP 764

Query: 795 LSFPL 799
           ++ P+
Sbjct: 765 MAVPV 769