Pairwise Alignments

Query, 705 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Xanthomonas campestris pv. campestris strain 8004

Subject, 581 a.a., chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  326 bits (836), Expect = 2e-93
 Identities = 179/306 (58%), Positives = 232/306 (75%)

Query: 399 LGELSQLLKAIADGDLTARMHGNQQGVFARMRDDANATVQRLTDIVGDITLAAQTIRTAS 458
           L E  ++ + +A GDLT R+  + +    ++          L +IV  +    ++I TAS
Sbjct: 221 LTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTAS 280

Query: 459 AEIAAGNADLAQRTEQQAANLEETAASMEELTSTVRQNADTAQQASRGAQAAADIAGRGG 518
            EIA+GN DL+ RTEQQA +LEETA++MEE+TSTVRQNAD A+QA++ A +A++IA +GG
Sbjct: 281 GEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGG 340

Query: 519 DMVGSVVETMGEIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 578
            +VG VV TM EI  SS+KI +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+
Sbjct: 341 QIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 400

Query: 579 EVRALAQRSAGAAKEVKHLIDASVDSVERGSARVEQAGQTMQQIVQSVQQVTTLIAEISA 638
           EVR+LAQRSA AAKE+K LI  SV  VE GSA V QAG TM+Q+V SV+ VT ++AEISA
Sbjct: 401 EVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISA 460

Query: 639 ASREQSSGIEQVARTVNDMDETTQRNAALVEEASAAARAMEEQAVELSEAVSVFRLDARR 698
           AS EQSSGIE++ R V  MDE TQ+NAALVE+A+AAA++M+EQAV L++++S+F+L+   
Sbjct: 461 ASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGA 520

Query: 699 PRLVAA 704
             + AA
Sbjct: 521 ASIPAA 526



 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 101/431 (23%), Positives = 175/431 (40%), Gaps = 62/431 (14%)

Query: 96  VQAGTEALTKTLSDAQARALAQEFAKAHLTLQAHYEAALGKF---ADAGYDTQVGDALVK 152
           V+   EAL K ++  Q  A+ Q+ AKA    +  ++A+   F     AG  T   + ++ 
Sbjct: 95  VKQTKEALDK-ITARQVTAVGQKKAKALDEARIAFDASKADFLALVKAGNSTSADEYVL- 152

Query: 153 GQDRAPSQALEALVTRAKTLADAAVLASAQAAQQKLVYAGVATIA-------AALCLVVV 205
              R  +      +  A+  AD+   A  QA   K V  G   I        AA+   ++
Sbjct: 153 ---RKITDTQNNYLALARAFADSQD-AQLQAEGAKAVADGAMAIEVTLACSMAAVLAAII 208

Query: 206 LGWWIRRSIVRPIEIVARAARSVAAGDLAARAVIGNRDEIGLLGQAM------------- 252
           LG+ + RSIV+P+    R A +VAAGDL  R    +RDE G L QA+             
Sbjct: 209 LGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSG 268

Query: 253 ----TQVVSTLA-DVSSAQADMAQRHE--AGEMSYRMDADAFPGAYGRMVGDTNGLVGAQ 305
               T+ ++T + +++S   D++ R E  AG +     A     +  R   D N     Q
Sbjct: 269 VRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNAD-NARQANQ 327

Query: 306 VGLIGDMLQVMQHYAVGDMSVDMPRLPGEKARITEAMDTT-----KHNLAAINGEIRGLV 360
           + +    + +     VG +   M  +     +I + +        + N+ A+N      V
Sbjct: 328 MAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALN----AAV 383

Query: 361 EAAAAGDFATRGNAQAYQFEFRGMVDGLNGLMHNVDHNLGELSQLLKAIADGDLTARMHG 420
           EAA AG+            + RG       +      +     ++   IAD     ++ G
Sbjct: 384 EAARAGE------------QGRGFAVVATEVRSLAQRSAAAAKEIKALIADS--VGKVEG 429

Query: 421 NQQGV--FARMRDDANATVQRLTDIVGDITLAAQTIRTASAEIAAGNADLAQRTEQQAAN 478
               V       +   ++V+ +TDIV +I+ A+    +   EI      + + T+Q AA 
Sbjct: 430 GSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAAL 489

Query: 479 LEETAASMEEL 489
           +E+ AA+ + +
Sbjct: 490 VEQAAAAAKSM 500



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 78  DPAQLDKHLSAFRAQGSKVQAGTEALTKTLSDAQARALAQEFAKAHLTLQAHYEAALGKF 137
           D      ++ A  A     +AG +     +   + R+LAQ  A A   ++A    ++GK 
Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGK- 426

Query: 138 ADAGYDTQVGDALVKGQDRAPSQALEALVTRAKTLADAAVLASAQAAQQ 186
                  + G ALV          +E +V+  +++ D     SA +A+Q
Sbjct: 427 ------VEGGSALV----AQAGATMEQVVSSVRSVTDIVAEISAASAEQ 465