Pairwise Alignments

Query, 705 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Xanthomonas campestris pv. campestris strain 8004

Subject, 596 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  310 bits (794), Expect = 1e-88
 Identities = 169/292 (57%), Positives = 218/292 (74%)

Query: 408 AIADGDLTARMHGNQQGVFARMRDDANATVQRLTDIVGDITLAAQTIRTASAEIAAGNAD 467
           AIA GDLT  +H + +    ++ +      + L+  V  +   +  I TA+ EIA+GN D
Sbjct: 226 AIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLD 285

Query: 468 LAQRTEQQAANLEETAASMEELTSTVRQNADTAQQASRGAQAAADIAGRGGDMVGSVVET 527
           L+ RTEQQAA+LEETA+SMEELTSTV+ NAD A+QA+  A  A+ IA  G  +VG VV+T
Sbjct: 286 LSSRTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQT 345

Query: 528 MGEIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRS 587
           M EI  SS KI +I+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRALAQRS
Sbjct: 346 MEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRS 405

Query: 588 AGAAKEVKHLIDASVDSVERGSARVEQAGQTMQQIVQSVQQVTTLIAEISAASREQSSGI 647
           + AAKE+K LI  SVD V+ GS  V QAG TM  ++ +VQ+VT +++EISAAS EQS+GI
Sbjct: 406 SSAAKEIKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGI 465

Query: 648 EQVARTVNDMDETTQRNAALVEEASAAARAMEEQAVELSEAVSVFRLDARRP 699
           +QV+  V  MDE TQ+NAALVE+ASAAA+++E+QA  L + V++FR++   P
Sbjct: 466 DQVSHAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGP 517



 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 116/524 (22%), Positives = 205/524 (39%), Gaps = 76/524 (14%)

Query: 9   ISLQSKLLGALALGLSIILLCALGGLGTAWLSLSGKVPLEVAQASASEEVTRDFRMQVQE 68
           +S++++L  A+A+ +   LL A+G  G   +S +  +  +++Q    + V  D       
Sbjct: 6   LSIKAQL--AIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAAD------- 56

Query: 69  WKNVLIR-GRDPAQLDKHLS------AFRAQGSKVQAGTEAL------TKTLSDAQARAL 115
             N LI  GR    LD+         A R  G    A  EAL      T      + R L
Sbjct: 57  --NTLIWIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVL 114

Query: 116 AQEFA------KAHLTLQAHYEAALGKFADAGYDTQVGDALVKGQDRAPSQALEALVTRA 169
            ++ +      +  LT  A    A  + A A    +VG      Q     QAL    T  
Sbjct: 115 VKKVSDGIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQ--LDGQALSKYETEQ 172

Query: 170 KTLADAAVLASAQAAQQKLVYAGVATIAAALCLVVVLGWWIRRSIVRPIEIVARAARSVA 229
              +  A +A  +A++   + A    I A L L     W +RR+I  P++   R   ++A
Sbjct: 173 AAQSAGASMARYEASRNFSIVA----IVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIA 228

Query: 230 AGDLAARAVIGNRDEIGLLGQAMTQVVSTLA------------------DVSSAQADMAQ 271
           +GDL     + +R+E+G L + + ++  +L+                  +++S   D++ 
Sbjct: 229 SGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSS 288

Query: 272 RHEAGEMSYRMDADAFPGAYGRMVGDT-NGLVGAQVGLIGDMLQVMQHYAVGDMSVDMPR 330
           R E    S    A +       +  +  N      + +    +    +  VG +   M  
Sbjct: 289 RTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEE 348

Query: 331 LPGEKARITEAMD-----TTKHNLAAINGEIRGLVEAAAAGDFATRGNAQAYQFEFRGMV 385
           +    A+IT+ +        + N+ A+N      VEAA AG+   RG        F  + 
Sbjct: 349 IRASSAKITDIVSIIDGIAFQTNILALN----AAVEAARAGE-QGRG--------FAVVA 395

Query: 386 DGLNGLMHNVDHNLGELSQLLKAIADGDLTARMHGNQQGVFARMRDDANATVQRLTDIVG 445
             +  L         E+ +L+    D          Q G    M D  NA VQR+TDI+ 
Sbjct: 396 TEVRALAQRSSSAAKEIKELIMHSVDRVQAGSELVGQAG--DTMSDVINA-VQRVTDIMS 452

Query: 446 DITLAAQTIRTASAEIAAGNADLAQRTEQQAANLEETAASMEEL 489
           +I+ A+        +++     + + T+Q AA +E+ +A+ + L
Sbjct: 453 EISAASNEQSAGIDQVSHAVTQMDEATQQNAALVEQASAAAKSL 496



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 68/398 (17%), Positives = 139/398 (34%), Gaps = 56/398 (14%)

Query: 310 GDMLQVMQHYAVGDMSVDMPRLPGEKARITEAMDTTKHNLAAINGEIRGLVEAAAAGDFA 369
           GD+ + +  ++  +M   +  L   +  ++  +   +    AI+   R +  A+   D +
Sbjct: 230 GDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREI--ASGNLDLS 287

Query: 370 TRGNAQAYQFEFRGMVDGLNGLMHNVDHNLGELSQLLKAIADGDLTARMHGNQQGVFARM 429
           +R   QA   E       +  L   V HN     Q      +    A       G   + 
Sbjct: 288 SRTEQQAASLE--ETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQT 345

Query: 430 RDDANATVQRLTDIVGDITLAAQTIRTASAEIAAGNADLAQRTEQQAANLEETAASMEEL 489
            ++  A+  ++TDIV  I   A      +   A   A   ++    A    E  A  +  
Sbjct: 346 MEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRS 405

Query: 490 TSTVRQNADTAQQASRGAQAAADIAGRGGDMVGSVVETMGEIEVSSKKIAEIISVIDGIA 549
           +S  ++  +    +    QA +++ G+ GD       TM ++  + +++ +I+       
Sbjct: 406 SSAAKEIKELIMHSVDRVQAGSELVGQAGD-------TMSDVINAVQRVTDIM------- 451

Query: 550 FQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAGAAKEVKHLIDASVDSVERGS 609
                                       SE+ A +   +    +V H +    ++ ++ +
Sbjct: 452 ----------------------------SEISAASNEQSAGIDQVSHAVTQMDEATQQNA 483

Query: 610 ARVEQ---AGQTMQQIVQSVQQVTTLIAEISAASREQSSGIEQVARTVNDMDETTQRNAA 666
           A VEQ   A ++++Q  Q++ Q   +     A    +         TV    +   + A+
Sbjct: 484 ALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGPTVKPPAAAASRATVKPAAKPAMKPAS 543

Query: 667 LVEEASAAARAMEEQAVELSEAVSVFRLDARRPRLVAA 704
               A A   A      +++ AV       +RP L AA
Sbjct: 544 AAPAAPATPTAPAAPVAKVAPAV-------KRPALPAA 574