Pairwise Alignments

Query, 368 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 336 a.a., D-alanine--D-alanine ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  148 bits (374), Expect = 2e-40
 Identities = 106/356 (29%), Positives = 176/356 (49%), Gaps = 28/356 (7%)

Query: 1   MRRIRVGLIFGGKSAEHEVSLQSARNILQAL-DPQRFEPVLIGIDKQGQWHLSAQESFLL 59
           M +I + L+ GG SAEH++SL SA     +L   ++F  + + +DK GQ+  +A +   L
Sbjct: 1   MSKINLLLLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCEL 60

Query: 60  DADDPSRIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGL 119
                                   + ++R  D  +A   +D V P +HG  GE G +Q  
Sbjct: 61  ----------------------TNNREIRFRDESKAPWPVDYVIPCIHGYPGETGDIQSY 98

Query: 120 LRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHT-AAQADVQTLIAQF 178
             +  LP+ G     S+   +K  AK      G+   P+    ++   A A  Q  + ++
Sbjct: 99  FNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYIFLNQYDDEAIAQTQAALEKW 158

Query: 179 GLPLFVKPANQGSSVGVSQVRSAEEFSAALELALRYDHKVLVEAAIAGREIECAVLG-NA 237
           G  +FVK A+QGSSVG  +V  A +    L+ A  Y   V+VE  I  RE+E AV     
Sbjct: 159 G-SIFVKAASQGSSVGCYKVDEASKVLGVLKDAFGYAPYVIVEKTIKARELEVAVYEYQG 217

Query: 238 TPQASVCGEVVVH-DAFYSYQTKYIRDDGAAT-VIPADIDAHTQHRIQQCALQAYQALDC 295
              A++ GE++   + FY++  KY +   A T V+  ++      +I+  A++A++ +  
Sbjct: 218 EVIATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNVPTDISDQIRAYAIKAFKGMKL 277

Query: 296 AGMARVDVFLCADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELAL 351
             ++R+D FL AD  I++NE+NT PG T ISM+PK+ +  G D+   ++ +I   L
Sbjct: 278 RHLSRIDFFLTADNEILLNEINTFPGSTPISMFPKMLQNHGHDFTQYLSLVINSQL 333