Pairwise Alignments

Query, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

Subject, 642 a.a., recombinase RecQ from Pseudomonas fluorescens FW300-N2C3

 Score = 83.6 bits (205), Expect = 6e-20
 Identities = 105/371 (28%), Positives = 157/371 (42%), Gaps = 57/371 (15%)

Query: 25  PAQIAAWPAIKAGRHTLVAAPTGSGKTLTAFLAAIDALIRDGLAQGGALPDQTRVIYVSP 84
           P Q AA  A+ AGR      PTGSGK+L   L A+             LP  T V  VSP
Sbjct: 16  PGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLPAL------------LLPHLTLV--VSP 61

Query: 85  LKALSNDIHLNLEAPLHGIRAELLAQGLPDVPVRTAVRTGDTPQRERAQARRVPPHILVT 144
           L AL  D  + L+   HGI A  +           + ++ D      A+AR     IL+ 
Sbjct: 62  LLALMQDQLVFLKR--HGIAAASI----------DSAQSRDEANDAMARARSGELKILMI 109

Query: 145 TPESLYVLLGSASGRSALRHV--RTVIVDEIHAVAA---DKRGSHLALTLERLQRLAEQP 199
           + E L     +   R+ L+ V    ++VDE H ++    + R  +L L   + Q    Q 
Sbjct: 110 SVERLK----NERFRNFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQHQFNIPQV 165

Query: 200 ITRVGLSATQKPIDTVAQFLVGVGEDGAAAPCEIVDIGYTRQRDLALALPPTP-LSVVLS 258
           +     +  +   D  A+F        A A  ++V  G+ R  +L L + P P ++    
Sbjct: 166 LLLTATATPKVIADMQAKF--------AIAAADVVTTGFYRP-NLNLLVEPVPGVAKRAR 216

Query: 259 NDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGSLSRETRL 318
             QWL         A+  + ++V+V  +R AE+ A HL +        A+H  L  E R 
Sbjct: 217 LVQWLG--------ARVGQPSIVYVTLQRTAEQIAEHLSQ--HGIEAEAYHAGLPHEQRE 266

Query: 319 LAERRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIATFLQRAGRSGHAVGGTPK 378
             +RR   G+   +VAT +  +G+D  D+  V     P+SI  + Q  GR+G    G P 
Sbjct: 267 AIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVHFDLPKSIENYSQEIGRAGR--DGQPS 324

Query: 379 ARLFPQTRDEL 389
             L    RD L
Sbjct: 325 DCLVLANRDSL 335