Pairwise Alignments

Query, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

Subject, 1484 a.a., DNA repair helicase Lhr (from data) from Dyella japonica UNC79MFTsu3.2

 Score = 1814 bits (4699), Expect = 0.0
 Identities = 939/1464 (64%), Positives = 1099/1464 (75%), Gaps = 59/1464 (4%)

Query: 5    LQHFHPVVAAWFGRTFAAPTPAQIAAWPAIKAGRHTLVAAPTGSGKTLTAFLAAIDALIR 64
            LQ FHP V  WF  TF APT AQ+AAWP+I+ GRHTLVAAPTGSGKTLTAFLAAID L+R
Sbjct: 3    LQAFHPAVRQWFEGTFPAPTAAQLAAWPSIREGRHTLVAAPTGSGKTLTAFLAAIDGLVR 62

Query: 65   DGLAQGGALPDQTRVIYVSPLKALSNDIHLNLEAPLHGIRAELLAQGLPDVPVRTAVRTG 124
            +GLA GGALPD T V+YVSPLKALSNDIH+NLEAPL GIRAEL A GLPDV +RTAVRTG
Sbjct: 63   EGLAHGGALPDATTVVYVSPLKALSNDIHINLEAPLEGIRAELAALGLPDVAIRTAVRTG 122

Query: 125  DTPQRERAQARRVPPHILVTTPESLYVLLGSASGRSALRHVRTVIVDEIHAVAADKRGSH 184
            DTPQ ER   RR PPHILVTTPESLY+LLGSASGR  L   RTVIVDEIHA+A+ KRGSH
Sbjct: 123  DTPQAERTLMRRQPPHILVTTPESLYILLGSASGREMLGGTRTVIVDEIHAMASTKRGSH 182

Query: 185  LALTLERLQRLAEQPITRVGLSATQKPIDTVAQFLVGVGEDGAAAP-------------- 230
            LAL+LERL+ L ++P+ R+GLSATQKPI+ VA+FLVG G D   A               
Sbjct: 183  LALSLERLEALCQRPLLRIGLSATQKPIEEVAKFLVGEGNDATLAAAFTPSPQRGEGWGE 242

Query: 231  ----------------------------------CEIVDIGYTRQRDLALALPPTPLSVV 256
                                              C IVD+G+TR+RDLA+ + P PL  V
Sbjct: 243  GDRRSVEAGTEKRAMLGRSAIASPGPSSAPPAHTCNIVDVGHTRERDLAIEVTPVPLEAV 302

Query: 257  LSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGSLSRET 316
            +SND W  VY  +A LAQ HRTTLVFVNTRRMAER ARHL E +GKQ VAAHHGSL+RE 
Sbjct: 303  MSNDAWELVYNRLAELAQAHRTTLVFVNTRRMAERVARHLSERMGKQAVAAHHGSLAREQ 362

Query: 317  RLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIATFLQRAGRSGHAVGGT 376
            RL AE+RLK GEL VLVATASLELG+DIGDVDLVCQL SPRSIA FLQRAGRSGHAV GT
Sbjct: 363  RLDAEQRLKRGELKVLVATASLELGIDIGDVDLVCQLSSPRSIAAFLQRAGRSGHAVSGT 422

Query: 377  PKARLFPQTRDELVECAALLDGIRRGELDALRFPIAPIDVLAQQIVAEAACEDWDEDALF 436
            PKARLFP +RD+L+ECAALLD +RRGELD L  P  P+DVLAQQIVAE AC +W+EDALF
Sbjct: 423  PKARLFPTSRDDLIECAALLDCVRRGELDTLAIPPQPLDVLAQQIVAEVACTEWNEDALF 482

Query: 437  ALVRRAWPFATLSRATFDAVVRMLCEGFSTRLGPRAGYLHRDAVNRRLHARRGARMTALT 496
            ALVRRA+P+  L R  FDA+VRML +GF+TR G RA Y+HRDAV+++L ARRGAR+TA+T
Sbjct: 483  ALVRRAYPYRELPREQFDAIVRMLADGFTTRRGARAAYVHRDAVHKQLRARRGARLTAVT 542

Query: 497  SGGTIPETGDYSVVLEPQAENIGTVNEDFAVESLTGDVFQLGNASYRILRVDADKVRVED 556
            SGG IP+T DY VVLEPQA  IG+V+EDFAVESL GD+FQLGN SYRI+RV+ D++RVED
Sbjct: 543  SGGAIPDTADYLVVLEPQATVIGSVHEDFAVESLAGDIFQLGNTSYRIIRVERDRLRVED 602

Query: 557  AKGAPPNIPFWLGEAPGRSDALSLAVSRLREEIATRLDGARHAGAQAWLCDEVGLAAEPA 616
            A G PP+IPFWLGEAPGRSD LS  VSRLREEI+ RLD        +WL + +GL+   A
Sbjct: 603  AHGVPPSIPFWLGEAPGRSDELSHGVSRLREEISARLDEGGVPEVLSWLRNTLGLSEPAA 662

Query: 617  QQLVEYLANACQALGAMPTQHCLVMERFFDATGGTQLIIHSPYGSRINRAWGLALRKRFC 676
            QQL +YLA A  ALG +PTQH LV ERFFD +GGTQL+IH+P+GSRINRAWGLALRKRFC
Sbjct: 663  QQLADYLARAKAALGVLPTQHTLVFERFFDESGGTQLVIHTPWGSRINRAWGLALRKRFC 722

Query: 677  RTFNFELQAAATEDAIVLSLSTSHSFALEEVARYLHSASAEHVLVQALLDAPLFGVRWRW 736
            R FNFELQAAATEDAIVLSLSTSHSF L EVARYLHS +AE VLVQALLDAPLF VRWRW
Sbjct: 723  RQFNFELQAAATEDAIVLSLSTSHSFPLIEVARYLHSNTAEQVLVQALLDAPLFPVRWRW 782

Query: 737  NATNAMALPRFSGGNKVAPQLQRMKSEDLLATVFPDQVACAENLVGEREVPDHPLVAQTL 796
            NAT ++ALPRF GG KVAPQ+QRM+SEDLLATVFPDQVAC EN+ GER++PDHPLV QTL
Sbjct: 783  NATTSLALPRFQGGRKVAPQIQRMRSEDLLATVFPDQVACLENIAGERQIPDHPLVGQTL 842

Query: 797  EDCLHQSMDSEGWLQVLRGLESGAITLVARDLAAPSPLAAEALNARPYAFLDDAPLEERR 856
             DCL ++MD +G L +LRGLE G IT+VARDL   SPLAAE L A PYA+LDDAPLEERR
Sbjct: 843  YDCLREAMDVDGLLHILRGLEGGQITVVARDLTTASPLAAEVLTAAPYAYLDDAPLEERR 902

Query: 857  TQAVQGRRYTP-QSSDDLGQLDPQAIAAVREEAWPQPRDAEEMHEALVGLGVLPVEEALD 915
            TQAVQ RR++   S++DLGQLDP AI AVR EAWPQ R A+EMHEAL  LG +  EEA  
Sbjct: 903  TQAVQTRRWSDGDSAEDLGQLDPDAIEAVRGEAWPQVRGADEMHEALSVLGFVSAEEAAG 962

Query: 916  AQWQAWLSALSAAGRATCLAVDG--GTALWISAERIEWFAPLYPHAVAQPPLQAPPDCRV 973
              W  WL AL+ A RAT L++ G     +W++AE++  +  ++  A  QPP++AP +   
Sbjct: 963  DAWDHWLEALAQARRATALSLPGHANWQVWVAAEKLPLWQAIHADAAMQPPIEAPAEFLA 1022

Query: 974  DDWQREWAVRELVRGRLSAVGPAQVSALCSAVRLPAAEVELALIGLQREGYVMAGRFSAQ 1033
              W RE A+ E+VRGRL  +GP  V+ L +++ + + +VELAL+ LQ EGYVM GRF+  
Sbjct: 1023 QPWTREDALLEMVRGRLVGLGPVTVATLAASLAVDSGDVELALLRLQSEGYVMQGRFTPA 1082

Query: 1034 ALEEEWCERHLLARIHRYTLGRLRREIEPVSQRDYARFLFEWQHLDADHRVAGPDALAGI 1093
            A E EWCERHLLARIHRYT+GRLRREIEPVS+RD+ RF F+WQH+    R++GPDAL   
Sbjct: 1083 ASETEWCERHLLARIHRYTIGRLRREIEPVSRRDFMRFQFDWQHVAPGARLSGPDALPAA 1142

Query: 1094 VGQLEGFEAPAALWESELLPARVRDYQPAWLDELCTAGRTVWARLRPGGGRSGNALRGTP 1153
            + QLEG+EA A  WE+ELLPAR+ DY   WLD+LC AGR  W RLR   G S + +R TP
Sbjct: 1143 IAQLEGYEAAAGAWEAELLPARIDDYSITWLDDLCRAGRVGWNRLRGATGGS-SPVRATP 1201

Query: 1154 IVLLPRREAQRWNALARA--DDDAPLGSRAQRVVEVLQEQGALFFDEIADAARLMATELE 1211
            IVLLPR+E   W+++A      D  L SRAQ V + L+E GALFFDE+   A L+ TELE
Sbjct: 1202 IVLLPRKEMALWSSVAGTGQPQDVLLSSRAQAVADALREHGALFFDELMSVAHLLRTELE 1261

Query: 1212 DVLSELVMRGRVHCDSYAGLRALLVPASKRPSALSRQRRRASALGIRDAGRWAPVRNLPS 1271
            D L ELV  GRV  DS+AGLRALL+PA+KR +   R+ RR    GI DAGRW+ VR    
Sbjct: 1262 DALGELVAAGRVTADSFAGLRALLLPAAKRDAQRHRRVRRHMLSGIEDAGRWSLVR---- 1317

Query: 1272 LPLAEASERHQEMLEHVARALLRRYGVVCWRLLEREAAWLPPWRELLRVYQRLEARGELR 1331
                E      E +EH+AR LLRRYGVV W+LLEREAAWLP WRELLRVY RLEARGE+R
Sbjct: 1318 -APREQDGARAESVEHIARTLLRRYGVVFWKLLEREAAWLPTWRELLRVYHRLEARGEIR 1376

Query: 1332 GGRFIAGVSGEQFALPDAIAAMRRVRAQPLAQQWICLSASDPANLLGNLLPGERIARVPG 1391
            GGRF+ G+ GEQFALP+AI  +R+VR QP   Q +CLS  DP NL+G +L G R+  V G
Sbjct: 1377 GGRFVEGLVGEQFALPEAIGKLRQVRQQPNEGQHVCLSGCDPLNLVGTVLSGNRLPAVIG 1436

Query: 1392 NRVAFLDGLPMAAWSGDRFQPLQE 1415
             RV + DG+ +AA   ++ Q L E
Sbjct: 1437 TRVLYEDGVAVAALVANKPQWLVE 1460